PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070267.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 245aa MW: 27507.9 Da PI: 5.4255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	7.2e-14	73	119	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h+e+ErrRR+riNs +++Lr+llP + +K +Ka+ L k+v+ +++L XP_027070267.1 73 QQHKEAERRRRERINSHLDKLRTLLPCN-----TKTDKASLLAKVVQRVREL 119 68***********************9.....9**********999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MQPQNLSENL DLYDYLAGTT SFSDAGAYCL PQNYDFQGVA QTQSLYNNTS FYSLEMSDVT 60 ESSPEARALA ASQQHKEAER RRRERINSHL DKLRTLLPCN TKTDKASLLA KVVQRVRELK 120 QQTSEIMQLE CFPSEADEIS VMLNDDSNDG KLLIKASLCC EDRSDLIPDL NEILKSFHLS 180 PLKAEIVTLG GRVRNVIILA GDKSQTDDES VPSLRDALRS LVQRSNHASG DRPKRRRVFD 240 QGIVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	ERRRRE
2	234	238	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	6e-68	bHLH family protein