PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070142.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 403aa MW: 43715.5 Da PI: 5.6643

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.9e-17	59	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + XP_027070142.1 59 KGPWSQEEDAILGRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104 79****************************.*********985 PP
2	Myb_DNA-binding	53.8	4.4e-17	111	155	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Iar + gRt++ +k++w++ XP_027070142.1 111 RKPFTDEEDSIILQAHAIHGNK-WASIARLLL-GRTDNAIKNHWNST 155 789*****************.****9.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MQVVTANDGS ANVITSEKRD SDDGEDGVVL IEDGSGSGGV GGSSRSSQAN SKKSLDRVKG 60 PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RKPFTDEEDS 120 IILQAHAIHG NKWASIARLL LGRTDNAIKN HWNSTLRRRC MDSDKFKFDS SQVMEDASAE 180 KSKASSNETL SCGDVNSSKS LDSKDVSSKE KMDDEQHEIS TQTDYQCSSE AGDPPSLFRP 240 VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSGS GMSNLFQAAY GDQLIPHQCG 300 HCCFASSGTA ESRTSLLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA 360 ANSVMSSRSH LQIRAPEGIR MYDSLEDRKC RLMGMMTEPV TSP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MQVVTANDGS ANVITSEKRD SDDGEDGVVL IEDGSGSGGV GGSSRSSQAN SKKSLDRVKG  60
PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RKPFTDEEDS  120
IILQAHAIHG NKWASIARLL LGRTDNAIKN HWNSTLRRRC MDSDKFKFDS SQVMEDASAE  180
KSKASSNETL SCGDVNSSKS LDSKDVSSKE KMDDEQHEIS TQTDYQCSSE AGDPPSLFRP  240
VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSGS GMSNLFQAAY GDQLIPHQCG  300
HCCFASSGTA ESRTSLLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA  360
ANSVMSSRSH LQIRAPEGIR MYDSLEDRKC RLMGMMTEPV TSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	3e-84	MYB family protein