PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070130.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 309aa    MW: 34517.2 Da    PI: 4.438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09127169855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er+RR r+++++  Lr+++P+      +K++Ka+i   Av Y+++Lq
  XP_027070130.1 127 SERKRRGRMKEKLYALRSVVPNI-----TKMDKASIIGDAVLYVQELQ 169
                     6*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MEGTADILGL GMGNINDFGF IDFMDVTNFE QFIELVRGET AEPAVEFCAD FDCDHIAGCI  60
GGESQFVQPP EDQLFDFNIT SLSEFNLVPE QTKVAEEEND GEEESSATAT TPTNRSKKTD  120
RSRTLVSERK RRGRMKEKLY ALRSVVPNIT KMDKASIIGD AVLYVQELQM QAKKLKAEIA  180
GLESSLSQPN NYPGESFLNA KKPNFTINLP LIKKIFQMEV FPVEEREFYV RMACNKGQGI  240
ATLLYKALES LAGFIVHSSN LAAAAETYIF TFTLNVNEFE VEIHLPNLKL WIASAFLNQG  300
FDFVTLPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-87bHLH family protein