PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069940.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 316aa    MW: 35400.5 Da    PI: 7.9616
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32186242158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  XP_027069940.1 186 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 242
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MREKSGTFDK LESAVKSISH ASTDSRSYLS GFENNSVSTE VLVFGNSRSS LTLPSQQNAG  60
LVTTSNELEA KFLEKSGGEI YREVETAKFL ESDQNSAQEL LKFSSIASPT MSEHLIPVTQ  120
LKLACTTYPC PESSFWGNSP DHGQTWHRGT LYGISDVELS GEIDSVHPDL QSMHDSRLAL  180
PLELAEEPVY VNAKQYHGIL RRRQLRAKAE LENKVAKARK PYLHESRHLH AMRRARGCGG  240
RFLSKKNVDK SDSRAASKKS IDFNATPTEM KDSLGSQHPF SSTSQKSCNE VRGFLLQEMQ  300
NTNTFEWGYQ YHCKTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-28NF-YA family protein