PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069938.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 319aa    MW: 35760.9 Da    PI: 7.9633
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32189245158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  XP_027069938.1 189 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 245
                     69****************************.**************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MREKSGTFDK LESAVKSISH ASTDSRSYLS GFENNSVSTE VLVFGNSRSS LTLPSQQNAG  60
LVTTSNELEA KFLEKSGGEI YREVETAKFL ESDQNSAQEL LKFSSIASPT MSEHLIPVTQ  120
LKLACTTYPC PESSFWGNSP DHGQTWENGM HGKSDSGNRF LLSDDSLEVH PDLQSMHDSR  180
LALPLELAEE PVYVNAKQYH GILRRRQLRA KAELENKVAK ARKPYLHESR HLHAMRRARG  240
CGGRFLSKKN VDKSDSRAAS KKSIDFNATP TEMKDSLGSQ HPFSSTSQKS CNEVRGFLLQ  300
EMQNTNTFEW GYQYHCKTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-28NF-YA family protein