PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027069938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YA | ||||||||
Protein Properties | Length: 319aa MW: 35760.9 Da PI: 7.9633 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.7 | 1.6e-32 | 189 | 245 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF XP_027069938.1 189 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 245 69****************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence |
MREKSGTFDK LESAVKSISH ASTDSRSYLS GFENNSVSTE VLVFGNSRSS LTLPSQQNAG 60 LVTTSNELEA KFLEKSGGEI YREVETAKFL ESDQNSAQEL LKFSSIASPT MSEHLIPVTQ 120 LKLACTTYPC PESSFWGNSP DHGQTWENGM HGKSDSGNRF LLSDDSLEVH PDLQSMHDSR 180 LALPLELAEE PVYVNAKQYH GILRRRQLRA KAELENKVAK ARKPYLHESR HLHAMRRARG 240 CGGRFLSKKN VDKSDSRAAS KKSIDFNATP TEMKDSLGSQ HPFSSTSQKS CNEVRGFLLQ 300 EMQNTNTFEW GYQYHCKTQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 2e-28 | NF-YA family protein |