PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069550.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 409aa MW: 45807.6 Da PI: 7.2345

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl XP_027069550.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP
2	Myb_DNA-binding	62.6	7.7e-20	47	98	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+k++ + mg +g+tl+++ks++qky+ XP_027069550.1 47 RLKWTPDLHERFIEAVNQLGGAdkaTPKSVLKLMGiQGLTLYHLKSHLQKYR 98 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAAGDRI 120 PETNAASIIN PSIGSQANKN LHIGEAIQMQ IEVQRRLHEQ LELRIEAQGK YLQAVLEKAQ 180 ETLGRQNLGS VGLEAAKVQL SELVSKMSDQ CLNSAFSDMK ELPGSCPQQT QTPQPTDCSM 240 DSCLTSCEGS LRDQEMHNNQ MMLRPLNLRT DMEFNNMNNE ASLQHAERRW CDDLMKEKRK 300 LVSTMNEEAE KACAAEKNIG NLSMSIGLQG GRWNSHHSYL EKRGREAESE IKFFDQPHNR 360 YGPIPPETQR PSEEYKLPFF APKLDLNTDD GADAGSRCKQ FDLNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAAGDRI  120
PETNAASIIN PSIGSQANKN LHIGEAIQMQ IEVQRRLHEQ LELRIEAQGK YLQAVLEKAQ  180
ETLGRQNLGS VGLEAAKVQL SELVSKMSDQ CLNSAFSDMK ELPGSCPQQT QTPQPTDCSM  240
DSCLTSCEGS LRDQEMHNNQ MMLRPLNLRT DMEFNNMNNE ASLQHAERRW CDDLMKEKRK  300
LVSTMNEEAE KACAAEKNIG NLSMSIGLQG GRWNSHHSYL EKRGREAESE IKFFDQPHNR  360
YGPIPPETQR PSEEYKLPFF APKLDLNTDD GADAGSRCKQ FDLNGFSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-126	G2-like family protein