PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069362.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 499aa MW: 56185.6 Da PI: 6.0939

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.5e-24	130	230	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027069362.1 130 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 224 7************999999964336777789999999******************************************55**** PP trihelix 81 yfdqle 86 ++d ++ XP_027069362.1 225 LLDTMD 230 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MESDGMAAGG GMYSNMGSGM LGLEISLHHQ LPQGQTTQNP HHMQPQPPQQ QLQPPPPPSH 60 HPMVVFGHHE ADQPHHPQHA QLSSKQAYPF SAKAKNQALA PSDDDEPGLG TENSADIDGM 120 RKIPPWQRMK WTDNMVRLLI MVVFYIGDEV GSEGNDPAGK KKGAGGVLQK KGKWKSVSRA 180 MMERGFFVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV ENQSLLDTMD HLSAKMKEEV 240 KKLLSSKHLF FREMCAYHNS CGHGGTGGAS SSGAAQQSTE VGGVEPSSQM QQQQRCLHTS 300 ENASTPPNLA RCEVEGSKTT KGRSFEEDND EDDDDDDDDE EYEDDVVEGG GSGCEHGHPE 360 EDDDTPDERC ARKRRRKGIF LSPLVQQMST ELVKVLQDES KNSAEKRQWI KNRLLQLEER 420 HVGFQSEAFE LEKQRLKWVK FSSKKEREME RDKLSNDRLR LENERMMLLI RQKELELLDV 480 YQQQQHQSSR KSDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MESDGMAAGG GMYSNMGSGM LGLEISLHHQ LPQGQTTQNP HHMQPQPPQQ QLQPPPPPSH  60
HPMVVFGHHE ADQPHHPQHA QLSSKQAYPF SAKAKNQALA PSDDDEPGLG TENSADIDGM  120
RKIPPWQRMK WTDNMVRLLI MVVFYIGDEV GSEGNDPAGK KKGAGGVLQK KGKWKSVSRA  180
MMERGFFVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV ENQSLLDTMD HLSAKMKEEV  240
KKLLSSKHLF FREMCAYHNS CGHGGTGGAS SSGAAQQSTE VGGVEPSSQM QQQQRCLHTS  300
ENASTPPNLA RCEVEGSKTT KGRSFEEDND EDDDDDDDDE EYEDDVVEGG GSGCEHGHPE  360
EDDDTPDERC ARKRRRKGIF LSPLVQQMST ELVKVLQDES KNSAEKRQWI KNRLLQLEER  420
HVGFQSEAFE LEKQRLKWVK FSSKKEREME RDKLSNDRLR LENERMMLLI RQKELELLDV  480
YQQQQHQSSR KSDPSSITG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	9e-74	Trihelix family protein