PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069340.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 250aa    MW: 28468 Da    PI: 8.775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-1565117155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR+riN  ++ Lr+llP+a+  + kKls  +++ ++ +YI +Lq
  XP_027069340.1  65 KKLNHNASERDRRKRINGLYSSLRSLLPPAY--QEKKLSIPSTVSRVLKYIPELQ 117
                     6789*************************63..8889***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MLTISPPLFS YPLGDLRRHE QNGSYHGETE TSESLLNSPT FQQQVGQNHE SHQFSSVNDQ  60
SKTVKKLNHN ASERDRRKRI NGLYSSLRSL LPPAYQEKKL SIPSTVSRVL KYIPELQKEV  120
ESLIEKKECL KTRISEQENS SPLRKQRNLG SSTQIPSSTV SASRLSDREV MVQISTMKFS  180
KCSYADVLSS LEQDGFFSLN SSCFESFGER VFHSLHLEIR GTPTVDLEGL RKKLLSFYSE  240
KLEEQSILSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-50bHLH family protein