PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027069177.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 723aa MW: 81858.4 Da PI: 4.9828

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027069177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62	1e-19	562	610	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027069177.1 562 GITREVLEQNSARKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKARKV 610 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MEAQTSPSPP FITAGLGPCE LSCSQLHSTI LYDQQWVFWS AFCNDKVHCG KPRLVAAAAT 60 ADGAVIKDQI KWILQLVMEA ITRSRCLVQF WGLVKIGDKT YLTTCDQPFA LRHYCFDGQA 120 LKKLCEYRKH CLEYLIPVDE DDDDHEIGPP GRVFRSGFPE FAWDVRDYTI REYPQRDYAV 180 GRVRDYWALP IYHPTRHLPI GVLEIVSPFG FYSIRHRVLE KLQCPPREVN LTTTCVSPPA 240 EANSCQDGEI GIIDEALSKV RQIRGLYYAE SWTTSGEILC HRGVDFIRKG QGVVGRAFSS 300 KSACFCRDVR QLSITEYPLV PNARHYGDSA CFAVCLQSSC PNNCIYVLEF FLPTNEEDED 360 EDEADYRDPR TLLNSIMETL KEHLGSSFKI ASGQELGQKL TVEVIKVSPE DEYSFEICST 420 TGIESQPRLE EAQGGDGMMQ LDFSSQQVDT ANAYINVQQS GIFGSPPRPE HEQGLVNISY 480 QELNLAAVDV VHNSMNGIYE QQNGIVRSTT GQELVQNMVS IPHDEPIVED PEREGAGIEQ 540 RDNEVTNLKM QKPSCPLKSE LGITREVLEQ NSARKLEDAA KNIGVSRSTL KRICREYGIH 600 RWPPRKARKV NQAFAEQKIV QPSTEDTHEH HQSGATRLED DNGMWVKAEY QGSMIKFRLP 660 FSARKIDLEE KVAQRLNLEV GSFKIEYQDE DDDRILITCD EDLRTFMSSL SSLGRTTIKM 720 YIV

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MEAQTSPSPP FITAGLGPCE LSCSQLHSTI LYDQQWVFWS AFCNDKVHCG KPRLVAAAAT  60
ADGAVIKDQI KWILQLVMEA ITRSRCLVQF WGLVKIGDKT YLTTCDQPFA LRHYCFDGQA  120
LKKLCEYRKH CLEYLIPVDE DDDDHEIGPP GRVFRSGFPE FAWDVRDYTI REYPQRDYAV  180
GRVRDYWALP IYHPTRHLPI GVLEIVSPFG FYSIRHRVLE KLQCPPREVN LTTTCVSPPA  240
EANSCQDGEI GIIDEALSKV RQIRGLYYAE SWTTSGEILC HRGVDFIRKG QGVVGRAFSS  300
KSACFCRDVR QLSITEYPLV PNARHYGDSA CFAVCLQSSC PNNCIYVLEF FLPTNEEDED  360
EDEADYRDPR TLLNSIMETL KEHLGSSFKI ASGQELGQKL TVEVIKVSPE DEYSFEICST  420
TGIESQPRLE EAQGGDGMMQ LDFSSQQVDT ANAYINVQQS GIFGSPPRPE HEQGLVNISY  480
QELNLAAVDV VHNSMNGIYE QQNGIVRSTT GQELVQNMVS IPHDEPIVED PEREGAGIEQ  540
RDNEVTNLKM QKPSCPLKSE LGITREVLEQ NSARKLEDAA KNIGVSRSTL KRICREYGIH  600
RWPPRKARKV NQAFAEQKIV QPSTEDTHEH HQSGATRLED DNGMWVKAEY QGSMIKFRLP  660
FSARKIDLEE KVAQRLNLEV GSFKIEYQDE DDDRILITCD EDLRTFMSSL SSLGRTTIKM  720
YIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	8e-54	Nin-like family protein