PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027069103.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 244aa    MW: 27793.5 Da    PI: 5.0878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027069103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-124993554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    + e Er+RR+++ ++++ Lr ++P+ +      K++Ka+i + A++YI++L
  XP_027069103.1 49 NIESERKRRKKLTERLHALRAVVPNiS------KMDKASIIKDAIDYIQEL 93
                    5689*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDDIDVVYKY YWENMFLQTE QLASYFDESF SFHDSNSPDG AQSSAASKNI ESERKRRKKL  60
TERLHALRAV VPNISKMDKA SIIKDAIDYI QELHNQERVI QAEISELESK RSIFLDFDEE  120
ISCNSKPKRS RFEQTCDSVG SRSSPIEVLE TFQKSILQLR VSHIGEKTIV VSLTCSKRTD  180
TIVKICEVFE SLNLKIITAN ITAFSGRLLN TVFLEANEEE KDVLKIKIQT AIAALNDPDS  240
PMSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360ERKRRKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-72bHLH family protein