PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068806.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 758aa MW: 85661 Da PI: 5.1763

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.1e-19	597	644	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027068806.1 597 ITHEVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKERKV 644 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence
MATEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KTPHLSLSAA 60 ADAAVIKTDI KWFMQLDTET IMWWRCLVQF WGLVRIGDKT YLTTCDQPFA LCYYFDPDVK 120 PLCEYRKLCL ECLIPVDDDD DDDVELIIGP PGRVFRSGFP EYAEDVHDYT SREYPQRDYA 180 VDRARYYWAL PIYHPTRHLP VGVLEIVSPY VVGDLPRRQV LEKLQKVNLT TTCVRLAEAS 240 SCQDGEIAKI DKALRNTKSI FKRPKHGLYY SETWTTSGEI LSSREGVDFI RKGQGVVGRA 300 FSSKSACFCR DVRQLSITEY PLVPNARHYG DSACFAVCLQ SSCSSNCIYV LEFFLPTNEK 360 DYGDCRIMLN SIMEKLKKYL RSSFKIALGQ ELGQKLTVEV IKVTPEDEFD SFEICSTTGI 420 ESTPRLGKVQ GGEGMMQLDF SSQQVDAANG SMNGSVESTP RLAKAQGGEG MMQVDFSSQQ 480 VDAANAYMNG VHGQQSGIVA KAPEHAQDFV NISYQELNLA GVDVAHNSMN GIYEQQDGIV 540 RSSIGQVLMQ NMVSIADYEP IVEDPKRDDA SIEQSGNEVT NLKMQEPSCT LKSDLGITHE 600 VLEQNSMRKL EDAAKNIGVS RSTLKRICRE YGIHRWPPRK ERKVNQVFAK QKVVQPAIEN 660 VEEHHWLDAT RLEDDSSMWM IKAKYQEDKI KFELSSSARK IDLENNIAQR FNLSGGSFKI 720 KYQDELNDWI LITCDTDLSF CMKTLQKLGR TTIEMWVS

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence

MATEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KTPHLSLSAA  60
ADAAVIKTDI KWFMQLDTET IMWWRCLVQF WGLVRIGDKT YLTTCDQPFA LCYYFDPDVK  120
PLCEYRKLCL ECLIPVDDDD DDDVELIIGP PGRVFRSGFP EYAEDVHDYT SREYPQRDYA  180
VDRARYYWAL PIYHPTRHLP VGVLEIVSPY VVGDLPRRQV LEKLQKVNLT TTCVRLAEAS  240
SCQDGEIAKI DKALRNTKSI FKRPKHGLYY SETWTTSGEI LSSREGVDFI RKGQGVVGRA  300
FSSKSACFCR DVRQLSITEY PLVPNARHYG DSACFAVCLQ SSCSSNCIYV LEFFLPTNEK  360
DYGDCRIMLN SIMEKLKKYL RSSFKIALGQ ELGQKLTVEV IKVTPEDEFD SFEICSTTGI  420
ESTPRLGKVQ GGEGMMQLDF SSQQVDAANG SMNGSVESTP RLAKAQGGEG MMQVDFSSQQ  480
VDAANAYMNG VHGQQSGIVA KAPEHAQDFV NISYQELNLA GVDVAHNSMN GIYEQQDGIV  540
RSSIGQVLMQ NMVSIADYEP IVEDPKRDDA SIEQSGNEVT NLKMQEPSCT LKSDLGITHE  600
VLEQNSMRKL EDAAKNIGVS RSTLKRICRE YGIHRWPPRK ERKVNQVFAK QKVVQPAIEN  660
VEEHHWLDAT RLEDDSSMWM IKAKYQEDKI KFELSSSARK IDLENNIAQR FNLSGGSFKI  720
KYQDELNDWI LITCDTDLSF CMKTLQKLGR TTIEMWVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-37	Nin-like family protein