PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068760.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 395aa    MW: 43875.2 Da    PI: 6.8826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08150170526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd C FaHg
  XP_027068760.1 150 ACPDFRK-GSCKKGDACEFAHG 170
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MMIGERNHPN PVVHVPPWPA SFADDQTADV SMTLSPNANA HSSPSFDDYS FCLQTDVLTA  60
LQRFLPSNLK TNLTDLVLED LDAAENDDGF GKDLDLPVDA YSCDHFRMFE FKVRKCMRGR  120
SHDWTECPYA HPGEKARRRD PRKYHYSGTA CPDFRKGSCK KGDACEFAHG VFECWLHPAR  180
YRTQPCKDGL NCKRRVCFFA HSPEQLRVLS PRADSYDGSP HRLALEASFG KALQFMSSPE  240
SGSPPSESPP MSPMTTSTSM SSLSRSLGSN SVSEIMASLR QLQLNKVQSV PSSWALQAGG  300
SGSGTPRAVM TRPGSYSLPS TPTRTVGRNG MRYFDNWDKG GGEEEPMMER VESGRDLRAK  360
IFQKLSKENP LDWVDPKPSD APPNPDVGWV SDLIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein