PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068604.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 391aa    MW: 43691.6 Da    PI: 6.8275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31031.6e-32112220199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae++            gg+  ++  l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+
  XP_027068604.1 112 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggnndsaGGE--KGLLLSFEDESGKGWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFE 204
                     99*****************************9988876555..6679************************************************ PP

                     E-SSSEE..EEEEE-S CS
              B3  84 ldgrsefelvvkvfrk 99 
                     +++ ++ +l+++++++
  XP_027068604.1 205 RHRLDGDRLFIGWRKR 220
                     755599999***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MSINHFSSDL PETHYRWPQQ QHHYHHTMEP SSAKTPPSRP TTTTTAAAFW PNSHLYRPIS  60
AHSPHNSAAF SFDLNNEEED EATAIEDERE SNARIITKQE EDKEIVPKEP LFEKPLTPSD  120
VGKLNRLVIP KQHAEKYFPL SGGGNNDSAG GEKGLLLSFE DESGKGWRFR YSYWNSSQSY  180
VLTKGWSRFV KEKRLDAGDV VLFERHRLDG DRLFIGWRKR RAGGPSQGGQ EGTGAAQAQP  240
ATSGGGGGGG GGGWTRVYFP SGHHPYPQQL QQYHDDGHGH GHGPALPYQP DCLRAAAAVL  300
QSQTTAAASA NSKRLRLFGV NLECQQQPDH DSETSSEPPT TPEASSTWTQ DQPHYQFHSY  360
NPRLHHSYFN HHNHMDINFS SDMNQTGYRQ G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.28e-61B3 family protein