PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068421.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 763aa    MW: 83790 Da    PI: 6.6772
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-06354373626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     Cr+++  G C+ G++CkF+H+
  XP_027068421.1 354 CRHYLN-GRCQEGEKCKFSHD 373
                     **9999.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    
MDGGADTLNE VDGLDPTDIK VQGKETVTQD NNVNLVDSSV VNNQTCEVPH EKDICNVVDF  60
HREFSPRREL NVFNEPFIKE VPETVSSSVD IDGIADMSIP VESNDAMNPT MEGHLPKGLE  120
HELHLKQKEL EKLVSTSGNL DLSFGAIEDD EIEEGEISGE ISEEMDLLYE DAVSLEEKKS  180
GKVQISEHTD KEAFTGDDGD ARLGDCDTRS SMFLDTVDSE TEGFRKEHTS AEVFSHSEET  240
ATKTLDGYDA SLEIGLTAEQ VSGVNKTDHP AISLENLSQH GLMHEDTAEN KSSVDAKREA  300
SVGKKKRKKG PLTKERREKK KKKERIKRAA KNRELGVKRL KLQPLSKPKT VTYCRHYLNG  360
RCQEGEKCKF SHDTTPLTKS KPCSYFARHS CMKGDNCPFD HQLSKYPCNN IVTNGFCSRG  420
AGCLFSHEIS AKDGSLPSSN VTKPESKSPT LVSKTISKKQ VNHQGVPHQH ADAKFSVMAN  480
FSGKSTEKKA SEHLDRPSAQ TPKGICFISH VRSPPGDSSK HKQAVPHLKG DNSEKVSYSM  540
TRNLEDSIQK SNDLAKGAPS KMPRGINFLS FGKRPLDESL NRDGVSESLL GQVSKSKLVD  600
SPLKSEVHIK IDNQAAQSSA DLELKVNKTA NIVSPSSMPQ AMKFLSYGKT PVDNPTAISQ  660
HDTLRCIVNM GLPLVQRKEY ALDGLKFFPA MPQRSASSSQ PFDQSLDQPS AGGMLSFSKT  720
SLLLNAPTSV QKALRSTLAF AAKLDSEIKL NQSLDTPSDM NKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304323KKKRKKGPLTKERREKKKKK
2304327KKKRKKGPLTKERREKKKKKERIK
3305324KKKRKKGPLTKERREKKKKK
4305328KKKRKKGPLTKERREKKKKKERIK
5305309KKRKK
6306325KKKRKKGPLTKERREKKKKK
7306329KKKRKKGPLTKERREKKKKKERIK
8307326KKKRKKGPLTKERREKKKKK
9316324RREKKKKKE
10319349KKKKKERIKRAAKNRELGVKRLKLQPLSKPK
11320350KKKKKERIKRAAKNRELGVKRLKLQPLSKPK