PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027068420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 763aa MW: 83790 Da PI: 6.6772 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.6e-06 | 354 | 373 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027068420.1 354 CRHYLN-GRCQEGEKCKFSHD 373 **9999.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence |
MDGGADTLNE VDGLDPTDIK VQGKETVTQD NNVNLVDSSV VNNQTCEVPH EKDICNVVDF 60 HREFSPRREL NVFNEPFIKE VPETVSSSVD IDGIADMSIP VESNDAMNPT MEGHLPKGLE 120 HELHLKQKEL EKLVSTSGNL DLSFGAIEDD EIEEGEISGE ISEEMDLLYE DAVSLEEKKS 180 GKVQISEHTD KEAFTGDDGD ARLGDCDTRS SMFLDTVDSE TEGFRKEHTS AEVFSHSEET 240 ATKTLDGYDA SLEIGLTAEQ VSGVNKTDHP AISLENLSQH GLMHEDTAEN KSSVDAKREA 300 SVGKKKRKKG PLTKERREKK KKKERIKRAA KNRELGVKRL KLQPLSKPKT VTYCRHYLNG 360 RCQEGEKCKF SHDTTPLTKS KPCSYFARHS CMKGDNCPFD HQLSKYPCNN IVTNGFCSRG 420 AGCLFSHEIS AKDGSLPSSN VTKPESKSPT LVSKTISKKQ VNHQGVPHQH ADAKFSVMAN 480 FSGKSTEKKA SEHLDRPSAQ TPKGICFISH VRSPPGDSSK HKQAVPHLKG DNSEKVSYSM 540 TRNLEDSIQK SNDLAKGAPS KMPRGINFLS FGKRPLDESL NRDGVSESLL GQVSKSKLVD 600 SPLKSEVHIK IDNQAAQSSA DLELKVNKTA NIVSPSSMPQ AMKFLSYGKT PVDNPTAISQ 660 HDTLRCIVNM GLPLVQRKEY ALDGLKFFPA MPQRSASSSQ PFDQSLDQPS AGGMLSFSKT 720 SLLLNAPTSV QKALRSTLAF AAKLDSEIKL NQSLDTPSDM NKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 323 | KKKRKKGPLTKERREKKKKK |
2 | 304 | 327 | KKKRKKGPLTKERREKKKKKERIK |
3 | 305 | 324 | KKKRKKGPLTKERREKKKKK |
4 | 305 | 328 | KKKRKKGPLTKERREKKKKKERIK |
5 | 305 | 309 | KKRKK |
6 | 306 | 325 | KKKRKKGPLTKERREKKKKK |
7 | 306 | 329 | KKKRKKGPLTKERREKKKKKERIK |
8 | 307 | 326 | KKKRKKGPLTKERREKKKKK |
9 | 316 | 324 | RREKKKKKE |
10 | 319 | 349 | KKKKKERIKRAAKNRELGVKRLKLQPLSKPK |
11 | 320 | 350 | KKKKKERIKRAAKNRELGVKRLKLQPLSKPK |