PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027068419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 818aa MW: 90433 Da PI: 6.405 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.3 | 8.2e-06 | 457 | 476 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027068419.1 457 CRHYLN-GRCQEGEKCKFSHD 476 **9999.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence |
MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPDDNDD 60 IDSNKSGEEA EHESLVNHNG MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT 120 DIKVQGKETV TQDNNVNLVD SSVVNNQTCE VPHEKDICNV VDFHREFSPR RELNVFNEPF 180 IKEVPETVSS SVDIDGIADM SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS 240 GNLDLSFGAI EDDEIEEGEI SGEISEEMDL LYEDAVSLEE KKSGKVQISE HTDKEAFTGD 300 DGDARLGDCD TRSSMFLDTV DSETEGFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT 360 AEQVSGVNKT DHPAISLENL SQHGLMHEDT AENKSSVDAK REASVGKKKR KKGPLTKERR 420 EKKKKKERIK RAAKNRELGV KRLKLQPLSK PKTVTYCRHY LNGRCQEGEK CKFSHDTTPL 480 TKSKPCSYFA RHSCMKGDNC PFDHQLSKYP CNNIVTNGFC SRGAGCLFSH EISAKDGSLP 540 SSNVTKPESK SPTLVSKTIS KKQVNHQGVP HQHADAKFSV MANFSGKSTE KKASEHLDRP 600 SAQTPKGICF ISHVRSPPGD SSKHKQAVPH LKGDNSEKVS YSMTRNLEDS IQKSNDLAKG 660 APSKMPRGIN FLSFGKRPLD ESLNRDGVSE SLLGQAMKFL SYGKTPVDNP TAISQHDTLR 720 CIVNMGLPLV QRKEYALDGL KFFPAMPQRS ASSSQPFDQS LDQPSAGGML SFSKTSLLLN 780 APTSVQKALR STLAFAAKLD SEIKLNQSLD TPSDMNKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 407 | 426 | KKKRKKGPLTKERREKKKKK |
2 | 407 | 430 | KKKRKKGPLTKERREKKKKKERIK |
3 | 408 | 427 | KKKRKKGPLTKERREKKKKK |
4 | 408 | 431 | KKKRKKGPLTKERREKKKKKERIK |
5 | 408 | 412 | KKRKK |
6 | 409 | 428 | KKKRKKGPLTKERREKKKKK |
7 | 409 | 432 | KKKRKKGPLTKERREKKKKKERIK |
8 | 410 | 429 | KKKRKKGPLTKERREKKKKK |
9 | 419 | 427 | RREKKKKKE |
10 | 422 | 452 | KKKKKERIKRAAKNRELGVKRLKLQPLSKPK |
11 | 423 | 453 | KKKKKERIKRAAKNRELGVKRLKLQPLSKPK |