PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068418.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 855aa MW: 94329.7 Da PI: 6.6995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.6e-06	446	465	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027068418.1 446 CRHYLN-GRCQEGEKCKFSHD 465 9999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence
MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPGEEAE 60 HESLVNHNGM DLEMSLVQQK SPFNETKEVH GFQDGGADTL NEVDGLDPTD IKVQGKETVT 120 QDNNVNLVDS SVVNNQTCEV PHEKDICNVV DFHREFSPRR ELNVFNEPFI KEVPETVSSS 180 VDIDGIADMS IPVESNDAMN PTMEGHLPKG LEHELHLKQK ELEKLVSTSG NLDLSFGAIE 240 DDEIEEGEIS GEISEEMDLL YEDAVSLEEK KSGKVQISEH TDKEAFTGDD GDARLGDCDT 300 RSSMFLDTVD SETEGFRKEH TSAEVFSHSE ETATKTLDGY DASLEIGLTA EQVSGVNKTD 360 HPAISLENLS QHGLMHEDTA ENKSSVDAKR EASVGKKKRK KGPLTKERRE KKKKKERIKR 420 AAKNRELGVK RLKLQPLSKP KTVTYCRHYL NGRCQEGEKC KFSHDTTPLT KSKPCSYFAR 480 HSCMKGDNCP FDHQLSKYPC NNIVTNGFCS RGAGCLFSHE ISAKDGSLPS SNVTKPESKS 540 PTLVSKTISK KQVNHQGVPH QHADAKFSVM ANFSGKSTEK KASEHLDRPS AQTPKGICFI 600 SHVRSPPGDS SKHKQAVPHL KGDNSEKVSY SMTRNLEDSI QKSNDLAKGA PSKMPRGINF 660 LSFGKRPLDE SLNRDGVSES LLGQVSKSKL VDSPLKSEVH IKIDNQAAQS SADLELKVNK 720 TANIVSPSSM PQAMKFLSYG KTPVDNPTAI SQHDTLRCIV NMGLPLVQRK EYALDGLKFF 780 PAMPQRSASS SQPFDQSLDQ PSAGGMLSFS KTSLLLNAPT SVQKALRSTL AFAAKLDSEI 840 KLNQSLDTPS DMNKT

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence

MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPGEEAE  60
HESLVNHNGM DLEMSLVQQK SPFNETKEVH GFQDGGADTL NEVDGLDPTD IKVQGKETVT  120
QDNNVNLVDS SVVNNQTCEV PHEKDICNVV DFHREFSPRR ELNVFNEPFI KEVPETVSSS  180
VDIDGIADMS IPVESNDAMN PTMEGHLPKG LEHELHLKQK ELEKLVSTSG NLDLSFGAIE  240
DDEIEEGEIS GEISEEMDLL YEDAVSLEEK KSGKVQISEH TDKEAFTGDD GDARLGDCDT  300
RSSMFLDTVD SETEGFRKEH TSAEVFSHSE ETATKTLDGY DASLEIGLTA EQVSGVNKTD  360
HPAISLENLS QHGLMHEDTA ENKSSVDAKR EASVGKKKRK KGPLTKERRE KKKKKERIKR  420
AAKNRELGVK RLKLQPLSKP KTVTYCRHYL NGRCQEGEKC KFSHDTTPLT KSKPCSYFAR  480
HSCMKGDNCP FDHQLSKYPC NNIVTNGFCS RGAGCLFSHE ISAKDGSLPS SNVTKPESKS  540
PTLVSKTISK KQVNHQGVPH QHADAKFSVM ANFSGKSTEK KASEHLDRPS AQTPKGICFI  600
SHVRSPPGDS SKHKQAVPHL KGDNSEKVSY SMTRNLEDSI QKSNDLAKGA PSKMPRGINF  660
LSFGKRPLDE SLNRDGVSES LLGQVSKSKL VDSPLKSEVH IKIDNQAAQS SADLELKVNK  720
TANIVSPSSM PQAMKFLSYG KTPVDNPTAI SQHDTLRCIV NMGLPLVQRK EYALDGLKFF  780
PAMPQRSASS SQPFDQSLDQ PSAGGMLSFS KTSLLLNAPT SVQKALRSTL AFAAKLDSEI  840
KLNQSLDTPS DMNKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	396	415	KKKRKKGPLTKERREKKKKK
2	396	419	KKKRKKGPLTKERREKKKKKERIK
3	397	416	KKKRKKGPLTKERREKKKKK
4	397	420	KKKRKKGPLTKERREKKKKKERIK
5	397	401	KKRKK
6	398	417	KKKRKKGPLTKERREKKKKK
7	398	421	KKKRKKGPLTKERREKKKKKERIK
8	399	418	KKKRKKGPLTKERREKKKKK
9	408	416	RREKKKKKE
10	411	441	KKKKKERIKRAAKNRELGVKRLKLQPLSKPK
11	412	442	KKKKKERIKRAAKNRELGVKRLKLQPLSKPK