PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068416.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 866aa MW: 95548.8 Da PI: 6.4871

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.8e-06	457	476	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027068416.1 457 CRHYLN-GRCQEGEKCKFSHD 476 9999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence
MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPDDNDD 60 IDSNKSGEEA EHESLVNHNG MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT 120 DIKVQGKETV TQDNNVNLVD SSVVNNQTCE VPHEKDICNV VDFHREFSPR RELNVFNEPF 180 IKEVPETVSS SVDIDGIADM SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS 240 GNLDLSFGAI EDDEIEEGEI SGEISEEMDL LYEDAVSLEE KKSGKVQISE HTDKEAFTGD 300 DGDARLGDCD TRSSMFLDTV DSETEGFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT 360 AEQVSGVNKT DHPAISLENL SQHGLMHEDT AENKSSVDAK REASVGKKKR KKGPLTKERR 420 EKKKKKERIK RAAKNRELGV KRLKLQPLSK PKTVTYCRHY LNGRCQEGEK CKFSHDTTPL 480 TKSKPCSYFA RHSCMKGDNC PFDHQLSKYP CNNIVTNGFC SRGAGCLFSH EISAKDGSLP 540 SSNVTKPESK SPTLVSKTIS KKQVNHQGVP HQHADAKFSV MANFSGKSTE KKASEHLDRP 600 SAQTPKGICF ISHVRSPPGD SSKHKQAVPH LKGDNSEKVS YSMTRNLEDS IQKSNDLAKG 660 APSKMPRGIN FLSFGKRPLD ESLNRDGVSE SLLGQVSKSK LVDSPLKSEV HIKIDNQAAQ 720 SSADLELKVN KTANIVSPSS MPQAMKFLSY GKTPVDNPTA ISQHDTLRCI VNMGLPLVQR 780 KEYALDGLKF FPAMPQRSAS SSQPFDQSLD QPSAGGMLSF SKTSLLLNAP TSVQKALRST 840 LAFAAKLDSE IKLNQSLDTP SDMNKT

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence

MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPDDNDD  60
IDSNKSGEEA EHESLVNHNG MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT  120
DIKVQGKETV TQDNNVNLVD SSVVNNQTCE VPHEKDICNV VDFHREFSPR RELNVFNEPF  180
IKEVPETVSS SVDIDGIADM SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS  240
GNLDLSFGAI EDDEIEEGEI SGEISEEMDL LYEDAVSLEE KKSGKVQISE HTDKEAFTGD  300
DGDARLGDCD TRSSMFLDTV DSETEGFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT  360
AEQVSGVNKT DHPAISLENL SQHGLMHEDT AENKSSVDAK REASVGKKKR KKGPLTKERR  420
EKKKKKERIK RAAKNRELGV KRLKLQPLSK PKTVTYCRHY LNGRCQEGEK CKFSHDTTPL  480
TKSKPCSYFA RHSCMKGDNC PFDHQLSKYP CNNIVTNGFC SRGAGCLFSH EISAKDGSLP  540
SSNVTKPESK SPTLVSKTIS KKQVNHQGVP HQHADAKFSV MANFSGKSTE KKASEHLDRP  600
SAQTPKGICF ISHVRSPPGD SSKHKQAVPH LKGDNSEKVS YSMTRNLEDS IQKSNDLAKG  660
APSKMPRGIN FLSFGKRPLD ESLNRDGVSE SLLGQVSKSK LVDSPLKSEV HIKIDNQAAQ  720
SSADLELKVN KTANIVSPSS MPQAMKFLSY GKTPVDNPTA ISQHDTLRCI VNMGLPLVQR  780
KEYALDGLKF FPAMPQRSAS SSQPFDQSLD QPSAGGMLSF SKTSLLLNAP TSVQKALRST  840
LAFAAKLDSE IKLNQSLDTP SDMNKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	426	KKKRKKGPLTKERREKKKKK
2	407	430	KKKRKKGPLTKERREKKKKKERIK
3	408	427	KKKRKKGPLTKERREKKKKK
4	408	431	KKKRKKGPLTKERREKKKKKERIK
5	408	412	KKRKK
6	409	428	KKKRKKGPLTKERREKKKKK
7	409	432	KKKRKKGPLTKERREKKKKKERIK
8	410	429	KKKRKKGPLTKERREKKKKK
9	419	427	RREKKKKKE
10	422	452	KKKKKERIKRAAKNRELGVKRLKLQPLSKPK
11	423	453	KKKKKERIKRAAKNRELGVKRLKLQPLSKPK