PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027068408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 413aa MW: 44826.1 Da PI: 7.1103 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.4e-06 | 29 | 69 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + lfC++++ ++C +C ++ H H+ XP_027068408.1 29 KPCDCCSSAAALLFCRTDSLFMCMTCDSKMHATnkigsrHE 69 57******99*******************996556666666 PP | |||||||
2 | zf-B_box | 26.2 | 1.6e-08 | 71 | 116 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H+++p+ XP_027068408.1 71 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHERSPV 116 689*****************************66888888998875 PP | |||||||
3 | CCT | 69.4 | 9.4e-24 | 339 | 383 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_027068408.1 339 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 383 9*****************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence |
MGRVAEDGGG TGVVANNRGV PAAWGLVAKP CDCCSSAAAL LFCRTDSLFM CMTCDSKMHA 60 TNKIGSRHER VWMCEVCEQA PASVTCKADA AALCVTCDRD IHSANPLARR HERSPVVPFY 120 DTAESVVKST AATLLVPLPP PAVDNSSNTG ANNTVNDTCH GHDAKMTTCF AHESYMSDPW 180 ISSNPMNSKL PTDAPEFKSV EFLFSDSDNY LDFDYRISSG ARIQQHYTSS GTDGVVPVQT 240 TKPPILPAQL PGHHEPSEKH FEIDFTKSHI SSYTPSYTSH SLSQSVSSSS LDVGVVPDGS 300 SVSEISYPFG RNLSGSTADL SGSSSGGNNQ GSQLPGMDRE ARVLRYREKR KNRKFEKTIR 360 YASRKAYAET RPRIKGRFAK RAEAIESEID QMFTCPGSAA FFPESRYGVV PSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 2e-88 | CO-like family protein |