PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027068398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 702aa MW: 77135.3 Da PI: 5.9855 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.6e-08 | 280 | 300 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_027068398.1 280 PCPDFRK-GTCRRGDMCEYAHG 300 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence |
MDMNHLTVET EDVLASVLEL AANNDMDGFK RWVEQDPTSV DEVGLWYGRQ KGSKQMVLEE 60 RTPLMVAATY GSIDVLELIL SLSEIDVNRS CGLDKSTALH CAASGGSVKA VDAVKLLLAA 120 GADPNLMDIN GHRPIDVIIV CPKFQERKLL LEKLLSTEAS LGDHRLRVST TTSNSNSNSP 180 PLSPSPGNGS PSSHSDSTSS PKISDLPASS MSEKKEYPVD PSLPDIKNSI YSTDEFRMYS 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGTCR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTQEEMRPLY VSTGSAVPSP RTGPSSTNAV 360 DFAGMNFLPG SPSSVTMMSP SPFNPPMSPS TNGIANMGWA QPNAPALHLP GSNLQSSRLR 420 SSFNARDIPT EDLNMLSEFD VQQQQFLDEI SRISQPNINS SSLNRTSRPK TMTPSNLEDL 480 FNVEGLSPRY SDQALASAVF SPTHKSAVLN QFQQQQQSML SPINTNFSPK SVDHSLLQAS 540 FGVSSSGRMS PRSMDPISPM SSRVSMLAQR EQQQQQQPQQ QFRSLSSRDL GSSSAAVVGS 600 PADTWSNWGS SMGKPDWAVS TEFGRLKRSS SFELGNEEPD LSWVQSLVRD SPQEMKEKSV 660 QYVAGAATSA EGANLDHQID QMDPSALTAL LDQMQLDHLI AQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |