PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027068387.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HRT-like
Protein Properties Length: 683aa    MW: 74832.7 Da    PI: 9.6174
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027068387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like51.41.9e-16290320131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv+l++G vCkr P++g+KRC eHKGm++
  XP_027068387.1 290 ICGVALGHGVVCKRAPAEGNKRCSEHKGMKV 320
                     8****************************97 PP

2HRT-like51.71.5e-16350379231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGvil+dGs+C+ +Pv+g+KRC eHKG++i
  XP_027068387.1 350 CGVILDDGSCCTSKPVQGNKRCLEHKGRKI 379
                     ***************************997 PP

3HRT-like551.3e-17417447131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv l+dG++C+rqP   RKRCeeHKG+Ri
  XP_027068387.1 417 ICGVDLDDGTFCTRQPPAARKRCEEHKGKRI 447
                     8*****************************7 PP

4HRT-like52.96e-17493522231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CG+++ dGs+C+r+P +g+KRC++HKGmR+
  XP_027068387.1 493 CGAATHDGSFCSRKPTEGNKRCWQHKGMRV 522
                     *****************************7 PP

5HRT-like46.18.4e-15551580130
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                     +CG++l++Gs C+r+P  g+KRC +HKG+R
  XP_027068387.1 551 TCGAALQNGSHCSRKPTNGNKRCSQHKGRR 580
                     7****************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    
MESGERAPPS ITLSVEAMEK SVTALATISS SSRLKREDCR RTKHDSAFSP WKVLIGPSDW  60
EDHSNGKEGA ERYRTQNLPN CTSCTGVYEL GTAVWRSKSR RDAGKLDPDF IIPVYLGKSD  120
NVRNRLQQYG REGAHLENGS SNTKLNGCNG SLAQTGSGLF KDIFSEGFSI VYRWAPMKSA  180
RDADKTESDL LGKFDYAWNK GSNGPRRHND ILKMLDRISK TSPFMAKLQV LSQKKKGIKI  240
KAYKPPFVEN GLDFYTSLET NGLLPQIFKF GRSQPRLIVR SVINENYISI CGVALGHGVV  300
CKRAPAEGNK RCSEHKGMKV NGFTSKLLKD GKSTLVANEY PINKTFTPPC GVILDDGSCC  360
TSKPVQGNKR CLEHKGRKIN NFPQLVNDKK ANYVYGPVLD YNTSLSKAGH TDSSSTICGV  420
DLDDGTFCTR QPPAARKRCE EHKGKRIKET ISISHRDEIP SSFIHSGPKI GIQESQNHSL  480
IPSVFCDITS PACGAATHDG SFCSRKPTEG NKRCWQHKGM RVDASPTSSS CNNSRRSSTS  540
LQYASEDFTS TCGAALQNGS HCSRKPTNGN KRCSQHKGRR ADLSPRNSND FRYYANSFSY  600
ASHGSAYETF SSTCGAPTLS GSYCRRSTAG GRCWQHEGYA NSYSYASYGS AYGNFSSTCG  660
APTRSGSSCS RSTAGGRCWQ HGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-94HRT-like family protein