PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 417aa MW: 47688.1 Da PI: 7.529

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.1	7.4e-18	256	304	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++kdAAk gv+ ++LKriCR+y I+RWP+Rk +++ XP_027068366.1 256 GITREVLEQNSWRSLKDAAKVFGVSRSTLKRICRKYDINRWPSRKARKV 304 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MQKISSFLLY EQGRQEPPVP NQAPATSPRD PVEINMDDYA WTPGDNQMGQ YRFVDDEELF 60 DKPNLLAYMA EAMIVSPPRI WPEVSVESPE ISVVYNLWEN DTRKPHQMRG FRLDGCGFGS 120 SQVFAPALLK KLAESLKLGL LNLGLPKKGN KTCLTTRAQP FHYYSHQDFK KPCDVHGQQS 180 GIVGSPIRPE RTQGFVESPH RQELLQNIEN IAHDEGNMEI DVANPEGVGA SIEPRDSEVM 240 NIKKRKSSRT LKSKLGITRE VLEQNSWRSL KDAAKVFGVS RSTLKRICRK YDINRWPSRK 300 ARKVNQAFAE QRVVQPSTEN TEEQHRPDTT RLGDDSSIWV KAEYQGYTMK FRLPLSAHKF 360 NLEEKVAERL NLPIGSFKIE YQDEENEWIW IACDEDLSTC MSTLSSLGRT TIKMLVR

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MQKISSFLLY EQGRQEPPVP NQAPATSPRD PVEINMDDYA WTPGDNQMGQ YRFVDDEELF  60
DKPNLLAYMA EAMIVSPPRI WPEVSVESPE ISVVYNLWEN DTRKPHQMRG FRLDGCGFGS  120
SQVFAPALLK KLAESLKLGL LNLGLPKKGN KTCLTTRAQP FHYYSHQDFK KPCDVHGQQS  180
GIVGSPIRPE RTQGFVESPH RQELLQNIEN IAHDEGNMEI DVANPEGVGA SIEPRDSEVM  240
NIKKRKSSRT LKSKLGITRE VLEQNSWRSL KDAAKVFGVS RSTLKRICRK YDINRWPSRK  300
ARKVNQAFAE QRVVQPSTEN TEEQHRPDTT RLGDDSSIWV KAEYQGYTMK FRLPLSAHKF  360
NLEEKVAERL NLPIGSFKIE YQDEENEWIW IACDEDLSTC MSTLSSLGRT TIKMLVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	3e-13	Nin-like family protein