PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068365.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1203aa MW: 134503 Da PI: 4.6289

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.5	6.4e-19	1037	1084	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027068365.1 1037 ITREVLEQNSTRRLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 1084 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1203 aa Download sequence
MEAISWCRCL VQFWGLVKTG DKTYLTTCDQ PFALQYFHFN GPDVKELCEY RKHCLEYLIP 60 VDEDHEIGPP GRVFRSGSPE YAPRVDDYTS REYPQRDYAV GRVAGSWVLP IYHHPTQHLP 120 IGVLEIVSAT DFSIPRCLVL DKLQKVNLRT TCVRLAEASS CQRGEIATID EALGKMRKIC 180 GVAYGCAKTW TTSGEILSSH GDVDFIRKGQ GVVGRAFSSK SACFCRDIRQ LSITDYPLLL 240 KARYLKRSAC FAVCLQSFCS NNCIYVLEFF LPMYEKDEDE DEADYGDPRT LLNSLMETLN 300 ECLGSSFKIA SGQELGQKLT VEVIKVSPED EFDSFEIYST TGIGGEGMTK LQMALFSAEG 360 LGPCELSMSH SLDDIDEHYW VFWSTCGNDE GGCGKPHHLS ATADGAVIKD QIKCFLQLLE 420 ETLIQCDCLV QFWGLVKMGD KTYLTTCDQP FALQYRHIRD AKKLCKYRKH CLGYLLPVDE 480 EDDDDKIGPP GRVFRSGSPE YTPCVDYYTS REYPQCDYAV GPVAAYWVLP IYHHPTRHLP 540 IGVLEIVSPR AFTGIPRRWV LEKLQNLLWE MNLTTVGVNL AQVNSCQDGE IAKIDEALSE 600 VTAICGLDDT ETWITSGEIL SSLGSVDFIH NTQGVVGRAF SSKSACFCRD VRQLSITKYP 660 LVVQARYHNY SACFAVCLQS SCSSNCIYVL EFFLPTYEED EADYGKDEDE ADYGEDEDEA 720 DYGEDEADYG DPRTLLNSLM ETLKEHLGSS FKIASGQELG QKLTVDVIKV SPEDKFDSFE 780 FCNTTGIESK PRLEEVQGGD GMMQLDFSSQ QVDAANGSMD GIHNQQNRSV GSTRRRQNGS 840 VGSPEDEFDS FEICSTAGIE SQPRLEEVQG GDGMMQLDFS SQQVDAANGS MDGIHNQQHG 900 SIGSTPRNAK AQGEGMVQVD NANGHINGVH AQQSGIVGSP PRPEHVQGIV NISDQELNLA 960 GVDVVHNSTD GVYEQKNGID RSSTGQEVVQ NMVSIAHDEP IVEDPRRNGA SIEQRDNEVT 1020 NLEVQKPSWT LKSDLGITRE VLEQNSTRRL EDAAKNIGVS RSTLKRICRE YGINRWPPRK 1080 ARKVSQALAV QKTVQPSTED THEHHRSDAT RLEDDNGMWV KAEYQGRMIK FRLPFSARKI 1140 DLEENVVQRL NLATGSFIIE YQDEDDDRIW ITCDRDLSTC MSTLSSLGRT TIKMYIVEDS 1200 PNR

Sequence ? help Back to Top

Protein Sequence Length: 1203 aa Download sequence

MEAISWCRCL VQFWGLVKTG DKTYLTTCDQ PFALQYFHFN GPDVKELCEY RKHCLEYLIP  60
VDEDHEIGPP GRVFRSGSPE YAPRVDDYTS REYPQRDYAV GRVAGSWVLP IYHHPTQHLP  120
IGVLEIVSAT DFSIPRCLVL DKLQKVNLRT TCVRLAEASS CQRGEIATID EALGKMRKIC  180
GVAYGCAKTW TTSGEILSSH GDVDFIRKGQ GVVGRAFSSK SACFCRDIRQ LSITDYPLLL  240
KARYLKRSAC FAVCLQSFCS NNCIYVLEFF LPMYEKDEDE DEADYGDPRT LLNSLMETLN  300
ECLGSSFKIA SGQELGQKLT VEVIKVSPED EFDSFEIYST TGIGGEGMTK LQMALFSAEG  360
LGPCELSMSH SLDDIDEHYW VFWSTCGNDE GGCGKPHHLS ATADGAVIKD QIKCFLQLLE  420
ETLIQCDCLV QFWGLVKMGD KTYLTTCDQP FALQYRHIRD AKKLCKYRKH CLGYLLPVDE  480
EDDDDKIGPP GRVFRSGSPE YTPCVDYYTS REYPQCDYAV GPVAAYWVLP IYHHPTRHLP  540
IGVLEIVSPR AFTGIPRRWV LEKLQNLLWE MNLTTVGVNL AQVNSCQDGE IAKIDEALSE  600
VTAICGLDDT ETWITSGEIL SSLGSVDFIH NTQGVVGRAF SSKSACFCRD VRQLSITKYP  660
LVVQARYHNY SACFAVCLQS SCSSNCIYVL EFFLPTYEED EADYGKDEDE ADYGEDEDEA  720
DYGEDEADYG DPRTLLNSLM ETLKEHLGSS FKIASGQELG QKLTVDVIKV SPEDKFDSFE  780
FCNTTGIESK PRLEEVQGGD GMMQLDFSSQ QVDAANGSMD GIHNQQNRSV GSTRRRQNGS  840
VGSPEDEFDS FEICSTAGIE SQPRLEEVQG GDGMMQLDFS SQQVDAANGS MDGIHNQQHG  900
SIGSTPRNAK AQGEGMVQVD NANGHINGVH AQQSGIVGSP PRPEHVQGIV NISDQELNLA  960
GVDVVHNSTD GVYEQKNGID RSSTGQEVVQ NMVSIAHDEP IVEDPRRNGA SIEQRDNEVT  1020
NLEVQKPSWT LKSDLGITRE VLEQNSTRRL EDAAKNIGVS RSTLKRICRE YGINRWPPRK  1080
ARKVSQALAV QKTVQPSTED THEHHRSDAT RLEDDNGMWV KAEYQGRMIK FRLPFSARKI  1140
DLEENVVQRL NLATGSFIIE YQDEDDDRIW ITCDRDLSTC MSTLSSLGRT TIKMYIVEDS  1200
PNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-39	Nin-like family protein