PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068364.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1263aa MW: 141198 Da PI: 4.7158

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068364.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.4	6.7e-19	1097	1144	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027068364.1 1097 ITREVLEQNSTRRLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 1144 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1263 aa Download sequence
MEARTSPSLP FSTEGLGSCE LSCFRLIKEE DYNEYNWVFW STCGNDEGGC GKPHHLSATA 60 DGAVIKDQIK WFLQLVMEAI SWCRCLVQFW GLVKTGDKTY LTTCDQPFAL QYFHFNGPDV 120 KELCEYRKHC LEYLIPVDED HEIGPPGRVF RSGSPEYAPR VDDYTSREYP QRDYAVGRVA 180 GSWVLPIYHH PTQHLPIGVL EIVSATDFSI PRCLVLDKLQ KVNLRTTCVR LAEASSCQRG 240 EIATIDEALG KMRKICGVAY GCAKTWTTSG EILSSHGDVD FIRKGQGVVG RAFSSKSACF 300 CRDIRQLSIT DYPLLLKARY LKRSACFAVC LQSFCSNNCI YVLEFFLPMY EKDEDEDEAD 360 YGDPRTLLNS LMETLNECLG SSFKIASGQE LGQKLTVEVI KVSPEDEFDS FEIYSTTGIG 420 GEGMTKLQMA LFSAEGLGPC ELSMSHSLDD IDEHYWVFWS TCGNDEGGCG KPHHLSATAD 480 GAVIKDQIKC FLQLLEETLI QCDCLVQFWG LVKMGDKTYL TTCDQPFALQ YRHIRDAKKL 540 CKYRKHCLGY LLPVDEEDDD DKIGPPGRVF RSGSPEYTPC VDYYTSREYP QCDYAVGPVA 600 AYWVLPIYHH PTRHLPIGVL EIVSPRAFTG IPRRWVLEKL QNLLWEMNLT TVGVNLAQVN 660 SCQDGEIAKI DEALSEVTAI CGLDDTETWI TSGEILSSLG SVDFIHNTQG VVGRAFSSKS 720 ACFCRDVRQL SITKYPLVVQ ARYHNYSACF AVCLQSSCSS NCIYVLEFFL PTYEEDEDEA 780 DYGEDEADYG DPRTLLNSLM ETLKEHLGSS FKIASGQELG QKLTVDVIKV SPEDKFDSFE 840 FCNTTGIESK PRLEEVQGGD GMMQLDFSSQ QVDAANGSMD GIHNQQNRSV GSTRRRQNGS 900 VGSPEDEFDS FEICSTAGIE SQPRLEEVQG GDGMMQLDFS SQQVDAANGS MDGIHNQQHG 960 SIGSTPRNAK AQGEGMVQVD NANGHINGVH AQQSGIVGSP PRPEHVQGIV NISDQELNLA 1020 GVDVVHNSTD GVYEQKNGID RSSTGQEVVQ NMVSIAHDEP IVEDPRRNGA SIEQRDNEVT 1080 NLEVQKPSWT LKSDLGITRE VLEQNSTRRL EDAAKNIGVS RSTLKRICRE YGINRWPPRK 1140 ARKVSQALAV QKTVQPSTED THEHHRSDAT RLEDDNGMWV KAEYQGRMIK FRLPFSARKI 1200 DLEENVVQRL NLATGSFIIE YQDEDDDRIW ITCDRDLSTC MSTLSSLGRT TIKMYIVEDS 1260 PNR

Sequence ? help Back to Top

Protein Sequence Length: 1263 aa Download sequence

MEARTSPSLP FSTEGLGSCE LSCFRLIKEE DYNEYNWVFW STCGNDEGGC GKPHHLSATA  60
DGAVIKDQIK WFLQLVMEAI SWCRCLVQFW GLVKTGDKTY LTTCDQPFAL QYFHFNGPDV  120
KELCEYRKHC LEYLIPVDED HEIGPPGRVF RSGSPEYAPR VDDYTSREYP QRDYAVGRVA  180
GSWVLPIYHH PTQHLPIGVL EIVSATDFSI PRCLVLDKLQ KVNLRTTCVR LAEASSCQRG  240
EIATIDEALG KMRKICGVAY GCAKTWTTSG EILSSHGDVD FIRKGQGVVG RAFSSKSACF  300
CRDIRQLSIT DYPLLLKARY LKRSACFAVC LQSFCSNNCI YVLEFFLPMY EKDEDEDEAD  360
YGDPRTLLNS LMETLNECLG SSFKIASGQE LGQKLTVEVI KVSPEDEFDS FEIYSTTGIG  420
GEGMTKLQMA LFSAEGLGPC ELSMSHSLDD IDEHYWVFWS TCGNDEGGCG KPHHLSATAD  480
GAVIKDQIKC FLQLLEETLI QCDCLVQFWG LVKMGDKTYL TTCDQPFALQ YRHIRDAKKL  540
CKYRKHCLGY LLPVDEEDDD DKIGPPGRVF RSGSPEYTPC VDYYTSREYP QCDYAVGPVA  600
AYWVLPIYHH PTRHLPIGVL EIVSPRAFTG IPRRWVLEKL QNLLWEMNLT TVGVNLAQVN  660
SCQDGEIAKI DEALSEVTAI CGLDDTETWI TSGEILSSLG SVDFIHNTQG VVGRAFSSKS  720
ACFCRDVRQL SITKYPLVVQ ARYHNYSACF AVCLQSSCSS NCIYVLEFFL PTYEEDEDEA  780
DYGEDEADYG DPRTLLNSLM ETLKEHLGSS FKIASGQELG QKLTVDVIKV SPEDKFDSFE  840
FCNTTGIESK PRLEEVQGGD GMMQLDFSSQ QVDAANGSMD GIHNQQNRSV GSTRRRQNGS  900
VGSPEDEFDS FEICSTAGIE SQPRLEEVQG GDGMMQLDFS SQQVDAANGS MDGIHNQQHG  960
SIGSTPRNAK AQGEGMVQVD NANGHINGVH AQQSGIVGSP PRPEHVQGIV NISDQELNLA  1020
GVDVVHNSTD GVYEQKNGID RSSTGQEVVQ NMVSIAHDEP IVEDPRRNGA SIEQRDNEVT  1080
NLEVQKPSWT LKSDLGITRE VLEQNSTRRL EDAAKNIGVS RSTLKRICRE YGINRWPPRK  1140
ARKVSQALAV QKTVQPSTED THEHHRSDAT RLEDDNGMWV KAEYQGRMIK FRLPFSARKI  1200
DLEENVVQRL NLATGSFIIE YQDEDDDRIW ITCDRDLSTC MSTLSSLGRT TIKMYIVEDS  1260
PNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-40	Nin-like family protein