PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068363.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 1279aa MW: 143000 Da PI: 4.6176

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.4	6.8e-19	1113	1160	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027068363.1 1113 ITREVLEQNSTRRLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 1160 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1279 aa Download sequence
MEARTSPSLP FSTEGLGSCE LSCFRLIKEE DYNEYNWVFW STCGNDEGGC GKPHHLSATA 60 DGAVIKDQIK WFLQLVMEAI SWCRCLVQFW GLVKTGDKTY LTTCDQPFAL QYFHFNGPDV 120 KELCEYRKHC LEYLIPVDED HEIGPPGRVF RSGSPEYAPR VDDYTSREYP QRDYAVGRVA 180 GSWVLPIYHH PTQHLPIGVL EIVSATDFSI PRCLVLDKLQ KVNLRTTCVR LAEASSCQRG 240 EIATIDEALG KMRKICGVAY GCAKTWTTSG EILSSHGDVD FIRKGQGVVG RAFSSKSACF 300 CRDIRQLSIT DYPLLLKARY LKRSACFAVC LQSFCSNNCI YVLEFFLPMY EKDEDEDEAD 360 YGDPRTLLNS LMETLNECLG SSFKIASGQE LGQKLTVEVI KVSPEDEFDS FEIYSTTGIG 420 GEGMTKLQMA LFSAEGLGPC ELSMSHSLDD IDEHYWVFWS TCGNDEGGCG KPHHLSATAD 480 GAVIKDQIKC FLQLLEETLI QCDCLVQFWG LVKMGDKTYL TTCDQPFALQ YRHIRDAKKL 540 CKYRKHCLGY LLPVDEEDDD DKIGPPGRVF RSGSPEYTPC VDYYTSREYP QCDYAVGPVA 600 AYWVLPIYHH PTRHLPIGVL EIVSPRAFTG IPRRWVLEKL QNLLWEMNLT TVGVNLAQVN 660 SCQDGEIAKI DEALSEVTAI CGLDDTETWI TSGEILSSLG SVDFIHNTQG VVGRAFSSKS 720 ACFCRDVRQL SITKYPLVVQ ARYHNYSACF AVCLQSSCSS NCIYVLEFFL PTYEEDEADY 780 GKDEDEADYG EDEDEADYGE DEADYGDPRT LLNSLMETLK EHLGSSFKIA SGQELGQKLT 840 VDVIKVSPED KFDSFEFCNT TGIESKPRLE EVQGGDGMMQ LDFSSQQVDA ANGSMDGIHN 900 QQNRSVGSTR RRQNGSVGSP EDEFDSFEIC STAGIESQPR LEEVQGGDGM MQLDFSSQQV 960 DAANGSMDGI HNQQHGSIGS TPRNAKAQGE GMVQVDNANG HINGVHAQQS GIVGSPPRPE 1020 HVQGIVNISD QELNLAGVDV VHNSTDGVYE QKNGIDRSST GQEVVQNMVS IAHDEPIVED 1080 PRRNGASIEQ RDNEVTNLEV QKPSWTLKSD LGITREVLEQ NSTRRLEDAA KNIGVSRSTL 1140 KRICREYGIN RWPPRKARKV SQALAVQKTV QPSTEDTHEH HRSDATRLED DNGMWVKAEY 1200 QGRMIKFRLP FSARKIDLEE NVVQRLNLAT GSFIIEYQDE DDDRIWITCD RDLSTCMSTL 1260 SSLGRTTIKM YIVEDSPNR

Sequence ? help Back to Top

Protein Sequence Length: 1279 aa Download sequence

MEARTSPSLP FSTEGLGSCE LSCFRLIKEE DYNEYNWVFW STCGNDEGGC GKPHHLSATA  60
DGAVIKDQIK WFLQLVMEAI SWCRCLVQFW GLVKTGDKTY LTTCDQPFAL QYFHFNGPDV  120
KELCEYRKHC LEYLIPVDED HEIGPPGRVF RSGSPEYAPR VDDYTSREYP QRDYAVGRVA  180
GSWVLPIYHH PTQHLPIGVL EIVSATDFSI PRCLVLDKLQ KVNLRTTCVR LAEASSCQRG  240
EIATIDEALG KMRKICGVAY GCAKTWTTSG EILSSHGDVD FIRKGQGVVG RAFSSKSACF  300
CRDIRQLSIT DYPLLLKARY LKRSACFAVC LQSFCSNNCI YVLEFFLPMY EKDEDEDEAD  360
YGDPRTLLNS LMETLNECLG SSFKIASGQE LGQKLTVEVI KVSPEDEFDS FEIYSTTGIG  420
GEGMTKLQMA LFSAEGLGPC ELSMSHSLDD IDEHYWVFWS TCGNDEGGCG KPHHLSATAD  480
GAVIKDQIKC FLQLLEETLI QCDCLVQFWG LVKMGDKTYL TTCDQPFALQ YRHIRDAKKL  540
CKYRKHCLGY LLPVDEEDDD DKIGPPGRVF RSGSPEYTPC VDYYTSREYP QCDYAVGPVA  600
AYWVLPIYHH PTRHLPIGVL EIVSPRAFTG IPRRWVLEKL QNLLWEMNLT TVGVNLAQVN  660
SCQDGEIAKI DEALSEVTAI CGLDDTETWI TSGEILSSLG SVDFIHNTQG VVGRAFSSKS  720
ACFCRDVRQL SITKYPLVVQ ARYHNYSACF AVCLQSSCSS NCIYVLEFFL PTYEEDEADY  780
GKDEDEADYG EDEDEADYGE DEADYGDPRT LLNSLMETLK EHLGSSFKIA SGQELGQKLT  840
VDVIKVSPED KFDSFEFCNT TGIESKPRLE EVQGGDGMMQ LDFSSQQVDA ANGSMDGIHN  900
QQNRSVGSTR RRQNGSVGSP EDEFDSFEIC STAGIESQPR LEEVQGGDGM MQLDFSSQQV  960
DAANGSMDGI HNQQHGSIGS TPRNAKAQGE GMVQVDNANG HINGVHAQQS GIVGSPPRPE  1020
HVQGIVNISD QELNLAGVDV VHNSTDGVYE QKNGIDRSST GQEVVQNMVS IAHDEPIVED  1080
PRRNGASIEQ RDNEVTNLEV QKPSWTLKSD LGITREVLEQ NSTRRLEDAA KNIGVSRSTL  1140
KRICREYGIN RWPPRKARKV SQALAVQKTV QPSTEDTHEH HRSDATRLED DNGMWVKAEY  1200
QGRMIKFRLP FSARKIDLEE NVVQRLNLAT GSFIIEYQDE DDDRIWITCD RDLSTCMSTL  1260
SSLGRTTIKM YIVEDSPNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-40	Nin-like family protein