PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027068303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 414aa MW: 45387.9 Da PI: 7.4576 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82.3 | 4.1e-26 | 176 | 219 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_027068303.1 176 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 219 79***************************************987 PP | |||||||
2 | QLQ | 43.2 | 1.2e-15 | 98 | 130 | 2 | 34 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +F+ aQ+q+L+ Q+l++++++a++ vPpeLl + XP_027068303.1 98 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 130 7*****************************976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence |
MDFNPKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI 60 SKLSSNLSAP CPNPTDSTPT PTKYPVRSGE AGGMGSYYFS LAQWQELELQ ALIFRHMLAG 120 AAVPPELLHH LVKKTLLNSS HHHHPYYAPH HHRHHYPPHF QSALLQSGYW GRASMDPEPG 180 RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG RNRSRKPVEI PTTRTATPGN GGANVCGGIL 240 KNSSFLVAGD TPHSAISGSS PSIDILHLSQ RSSESIVRSQ NDVHGDDTRS SGQILRHFFD 300 DWPRSLQESE DGGSNGTSAT TDLSISVSGN ATNSDFSLKL STGDGDDTTD AENVERERSQ 360 SNWGVTGTWG ANHVAPMGGP LAEALRSSTS NSSPTSVLHQ LQRRSASETS YVST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-60 | GRF family protein |