PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027068123.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 1112aa MW: 122478 Da PI: 6.7185

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027068123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.8	7.3e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_027068123.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldftMQPPAQ--ELVARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 224 99***************************96555444..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_027068123.1 225 KQQLLLGIRRA 235 8889**997 PP
2	Auxin_resp	117	1.6e-38	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ XP_027068123.1 260 AAHAAANNSPFVVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 343 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1112 aa Download sequence
MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS 120 DLSTKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTMQPP AQELVARDLH 180 ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL 420 PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ 480 FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ 540 LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPSQPQQQ QQLMCQNSQQ NLLPSQSQDP 600 ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRS 660 LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG 720 HVGHSLTATT NHLSAAGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT 780 HRGTAMGDEI AQPSAALLSS SGLETMSASG NLVKDLLQKP DVKPSLNVSK SQNQGFFAHQ 840 TYLNASGAQM EYLDTQSSAT SVCLSQNDVQ LPHGTNQMSF NSQPVLFRDT SQEVQADPRN 900 NVSFGANIDN QFGMAMMPDS VSTKGMLGSG KDFSSNLDAG GGMISSYENP KETQPELSSS 960 MVSQSFGVPD MTFNSIDSAI NDGNFMNRGP WAPPQLPRMR TYTKVYKRGA VGRSIDITRY 1020 SGYEELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VNCVRYIKIL 1080 SPQEVQQMSL DGDFGNSVLP NQACSSSDGG NV

Sequence ? help Back to Top

Protein Sequence Length: 1112 aa Download sequence

MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS  120
DLSTKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTMQPP AQELVARDLH  180
ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL  420
PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ  480
FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ  540
LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPSQPQQQ QQLMCQNSQQ NLLPSQSQDP  600
ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRS  660
LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG  720
HVGHSLTATT NHLSAAGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT  780
HRGTAMGDEI AQPSAALLSS SGLETMSASG NLVKDLLQKP DVKPSLNVSK SQNQGFFAHQ  840
TYLNASGAQM EYLDTQSSAT SVCLSQNDVQ LPHGTNQMSF NSQPVLFRDT SQEVQADPRN  900
NVSFGANIDN QFGMAMMPDS VSTKGMLGSG KDFSSNLDAG GGMISSYENP KETQPELSSS  960
MVSQSFGVPD MTFNSIDSAI NDGNFMNRGP WAPPQLPRMR TYTKVYKRGA VGRSIDITRY  1020
SGYEELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VNCVRYIKIL  1080
SPQEVQQMSL DGDFGNSVLP NQACSSSDGG NV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein