PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067960.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 812aa MW: 93291.8 Da PI: 7.4318

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.1	1.9e-25	31	118	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn YA ++GF vrk++ +k + g +t+r+f C+keg+r+++k++ ++++r+raet+tgC a++ + +++ ++k++vt+++ eHnH+l XP_027067960.1 31 KFYNMYAATIGFGVRKEYCNKD-KLGIVTSRKFACNKEGFRRQDKRD-RETKRPRAETKTGCLACVIILLDRdTKKYKVTQFVAEHNHPL 118 6****************998.7788*************999.99**************999989************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence
MGDKEDQLDM TQKGFIPYYG QLFDSDDKAY KFYNMYAATI GFGVRKEYCN KDKLGIVTSR 60 KFACNKEGFR RQDKRDRETK RPRAETKTGC LACVIILLDR DTKKYKVTQF VAEHNHPLHI 120 PQCVHLIPSQ RRTTITQDNS ELVDAYGLSL KQSNNLVDKL GYLPNKRSRG LRFGEAGTIF 180 RYFQQQLLEN PSFYFAVQLD SEEQLTNVFW ADARMTIDYK YFGEVVTFDT TFRKNEEYRP 240 LGIFLGFNHH RQMVIFGAAL LYDDSVDSYK WLFQTFLEAM SGKPPRTFFT DQEPAMAKAS 300 ASVMPNTFHG LCTHHIRQNF LKHLGHMMRT ETGLVQLFSK CMLEIEDEVA FEETWREMLQ 360 KHNLDSNTWL KSIYELREKW AKTYMKTKLT LGMRSKQLSK SFNADLKHHL KTDQDLVEFF 420 TEFHRAVEKR RYKELTAEYG ARQKVPSLKI KYSPMLNQVA EIYTPTIFEE FQDEFDVSLA 480 LVVKGHTVND NVHEYMLARY DGGDDQRVIC EKSTQSVLCS CQKYECEGIL CSHAIKVLDL 540 LNIKLVPNDL IEKRWTRDAK KGILKGPNQE NDMEEDVHLK VVGRYRMLCS TLVRVAIRAA 600 ECQEATDYLV QCVDKLTRKV EEICNKQMSI EQASTNHQSS YNATDQEDVL VISMGVNPSG 660 SKSGQGCKSN KRTGSWTDMF GEKSMYESNN NQVQVIADQS QEVSVDHVSS PQSANNSVSA 720 RSCSQSTGDL LHLHQATSYP SQDSNSNSLI GQSSVEVVQR ANNGAVLENR NFLMNFNGLG 780 TAMSPTGTQF LMVKQSIFYY HHTYLQSLYL CD

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence

MGDKEDQLDM TQKGFIPYYG QLFDSDDKAY KFYNMYAATI GFGVRKEYCN KDKLGIVTSR  60
KFACNKEGFR RQDKRDRETK RPRAETKTGC LACVIILLDR DTKKYKVTQF VAEHNHPLHI  120
PQCVHLIPSQ RRTTITQDNS ELVDAYGLSL KQSNNLVDKL GYLPNKRSRG LRFGEAGTIF  180
RYFQQQLLEN PSFYFAVQLD SEEQLTNVFW ADARMTIDYK YFGEVVTFDT TFRKNEEYRP  240
LGIFLGFNHH RQMVIFGAAL LYDDSVDSYK WLFQTFLEAM SGKPPRTFFT DQEPAMAKAS  300
ASVMPNTFHG LCTHHIRQNF LKHLGHMMRT ETGLVQLFSK CMLEIEDEVA FEETWREMLQ  360
KHNLDSNTWL KSIYELREKW AKTYMKTKLT LGMRSKQLSK SFNADLKHHL KTDQDLVEFF  420
TEFHRAVEKR RYKELTAEYG ARQKVPSLKI KYSPMLNQVA EIYTPTIFEE FQDEFDVSLA  480
LVVKGHTVND NVHEYMLARY DGGDDQRVIC EKSTQSVLCS CQKYECEGIL CSHAIKVLDL  540
LNIKLVPNDL IEKRWTRDAK KGILKGPNQE NDMEEDVHLK VVGRYRMLCS TLVRVAIRAA  600
ECQEATDYLV QCVDKLTRKV EEICNKQMSI EQASTNHQSS YNATDQEDVL VISMGVNPSG  660
SKSGQGCKSN KRTGSWTDMF GEKSMYESNN NQVQVIADQS QEVSVDHVSS PQSANNSVSA  720
RSCSQSTGDL LHLHQATSYP SQDSNSNSLI GQSSVEVVQR ANNGAVLENR NFLMNFNGLG  780
TAMSPTGTQF LMVKQSIFYY HHTYLQSLYL CD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein