PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067679.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 770aa MW: 86249 Da PI: 5.375

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.4	2.8e-18	609	656	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI RWP Rk +++ XP_027067679.1 609 ITREVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIGRWPPRKERKV 656 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MAQTSPSPPF STEGLGPCEL SYSHSFDNHQ WVFWSTCGND KGRCGKPHHL SATADGAVIK 60 DDIKYCLQFV METIMWCQCL VQFWGLVKTG DKTYLTTCDL PFALQYYPFN GSPATNLLKL 120 CEYRKHCLEY LIPVDEDDDG DEVQRIIGPP GRVFRSGLPE YAWNVGEYTS REYPQRDYAV 180 GRVMRYWVLP IYHHPTRHLP IGVLEIVSPS DFVGLPRYRV LENLQNLLLV VNLTTTCVSL 240 LTEVNSCQRG EIAIIDEALS KVRKICGLGY GVTKTWTISG EILSSHGGVD FIRNGQGVVG 300 KAFSSKSACF CRDIRQLSIT EYPLVPNARY WKSSTCFAVC LQSSCSNNCI YVLEFFIPTY 360 EKHSFGDLRT LLNSLMESLK ERLGSSFKIA SGQELGKKLA VEVIKVSPED EFDSFEICST 420 TSNECTPRLV EVQGGAGMMQ LDFSSQQVDV ANGSMNGIHE QQNGSVGSTP RLAKVQGGEG 480 MMQLGFSSQQ VDTANACING VHGQQNGIVG SPPRPEPTQD FINMPYQELN LAGVDVAHNS 540 MDGIYEQQNG IVRSTTGQEL VQNMVSMAHD EPIVEDPERD DAIIEQSGNE VTNLKMQEPS 600 CTLKSDLGIT REVLEQNSMR KLEDAAKNIG VSRSTLKRIC REYGIGRWPP RKERKVNQVF 660 AKQKVVQPAT EYIEENHQSD ATRLEDDISM WVIKAKYQED KIKFELSSSA RKIDLEKNIA 720 QRFNLSLGSF KIKYQDELND WILITCDTDL SFCMKTLSKL GRTTIEMLVS

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MAQTSPSPPF STEGLGPCEL SYSHSFDNHQ WVFWSTCGND KGRCGKPHHL SATADGAVIK  60
DDIKYCLQFV METIMWCQCL VQFWGLVKTG DKTYLTTCDL PFALQYYPFN GSPATNLLKL  120
CEYRKHCLEY LIPVDEDDDG DEVQRIIGPP GRVFRSGLPE YAWNVGEYTS REYPQRDYAV  180
GRVMRYWVLP IYHHPTRHLP IGVLEIVSPS DFVGLPRYRV LENLQNLLLV VNLTTTCVSL  240
LTEVNSCQRG EIAIIDEALS KVRKICGLGY GVTKTWTISG EILSSHGGVD FIRNGQGVVG  300
KAFSSKSACF CRDIRQLSIT EYPLVPNARY WKSSTCFAVC LQSSCSNNCI YVLEFFIPTY  360
EKHSFGDLRT LLNSLMESLK ERLGSSFKIA SGQELGKKLA VEVIKVSPED EFDSFEICST  420
TSNECTPRLV EVQGGAGMMQ LDFSSQQVDV ANGSMNGIHE QQNGSVGSTP RLAKVQGGEG  480
MMQLGFSSQQ VDTANACING VHGQQNGIVG SPPRPEPTQD FINMPYQELN LAGVDVAHNS  540
MDGIYEQQNG IVRSTTGQEL VQNMVSMAHD EPIVEDPERD DAIIEQSGNE VTNLKMQEPS  600
CTLKSDLGIT REVLEQNSMR KLEDAAKNIG VSRSTLKRIC REYGIGRWPP RKERKVNQVF  660
AKQKVVQPAT EYIEENHQSD ATRLEDDISM WVIKAKYQED KIKFELSSSA RKIDLEKNIA  720
QRFNLSLGSF KIKYQDELND WILITCDTDL SFCMKTLSKL GRTTIEMLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-34	Nin-like family protein