PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067671.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 712aa MW: 80046.6 Da PI: 7.0756

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	57.1	3.6e-18	563	606	5	48
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+ e+l+++ + dAAk++gv++++LKriCR+yGI+RWP Rk XP_027067671.1 563 ITREVLEQNSTRRLGDAAKNIGVSQSTLKRICREYGIHRWPPRK 606 899****************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MDVRKIQRLG QGAKGAAAAL RGLHIGSAAN GAVIKDHIKW FLPLVIEAIS WLRCLVQFWG 60 LVKIGDKTYL TTCDQPFALH YYCFDGSIVE QLCEYRKHCL EYLIPVDEDD DDHEIGPPGR 120 VFRSGLPEYA PYVAGYTIRE YPQRDYAVDR VKQYWALPIY HHPTQHLPIG VLEIVSATDF 180 YRLPRRRVLE KLENLPRELN LTTTCVSLLA KVNSCQRGEI AIIDKALVKV RNIYGIWTAF 240 GEILCLHGAT EFIWKGQGVV GKAFSSKSAC FCRDVRQLSI TDNPLAPIAR YLKTSACFAV 300 CLQSSCSNNC IYVLEFFLPT NEKDSGDCRI MLNSIMEKLK KYLRSSFKIP SGQELGQKLT 360 VEVIKVSPED EFDSFEICSA TSIESTPRLG EVQGAEGMMQ LDLSCQQVDP ANGSMNGIHE 420 QQNGSVGSTP RLAKGMMPVD FSSQLVDNAN ACINGVHAQQ GGIVGSPLRL EHVQGFVNIS 480 YQELNLAGID VAHNSMNGIY EKRNGVVRSS TQEVVQNMVS IAHDEPIAED PQRDGARIEQ 540 RDNEVTNLKM QKPRCTLKSD LGITREVLEQ NSTRRLGDAA KNIGVSQSTL KRICREYGIH 600 RWPPRKAGKD THEHRQSGAT RLEDDNGMWV KAEYQGCMIK FRLPFSARKI DLEEKVAQRL 660 NLAMGSFKIE YQDEDNDWIW ITCDEDLRTF MSTLSSLGRT TIKMVVKLIE HL

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MDVRKIQRLG QGAKGAAAAL RGLHIGSAAN GAVIKDHIKW FLPLVIEAIS WLRCLVQFWG  60
LVKIGDKTYL TTCDQPFALH YYCFDGSIVE QLCEYRKHCL EYLIPVDEDD DDHEIGPPGR  120
VFRSGLPEYA PYVAGYTIRE YPQRDYAVDR VKQYWALPIY HHPTQHLPIG VLEIVSATDF  180
YRLPRRRVLE KLENLPRELN LTTTCVSLLA KVNSCQRGEI AIIDKALVKV RNIYGIWTAF  240
GEILCLHGAT EFIWKGQGVV GKAFSSKSAC FCRDVRQLSI TDNPLAPIAR YLKTSACFAV  300
CLQSSCSNNC IYVLEFFLPT NEKDSGDCRI MLNSIMEKLK KYLRSSFKIP SGQELGQKLT  360
VEVIKVSPED EFDSFEICSA TSIESTPRLG EVQGAEGMMQ LDLSCQQVDP ANGSMNGIHE  420
QQNGSVGSTP RLAKGMMPVD FSSQLVDNAN ACINGVHAQQ GGIVGSPLRL EHVQGFVNIS  480
YQELNLAGID VAHNSMNGIY EKRNGVVRSS TQEVVQNMVS IAHDEPIAED PQRDGARIEQ  540
RDNEVTNLKM QKPRCTLKSD LGITREVLEQ NSTRRLGDAA KNIGVSQSTL KRICREYGIH  600
RWPPRKAGKD THEHRQSGAT RLEDDNGMWV KAEYQGCMIK FRLPFSARKI DLEEKVAQRL  660
NLAMGSFKIE YQDEDNDWIW ITCDEDLRTF MSTLSSLGRT TIKMVVKLIE HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-36	Nin-like family protein