PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027067666.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 352aa    MW: 40478.7 Da    PI: 7.9194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027067666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.82.4e-73334828374
            GRAS  28 selaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl......fsevsPilkfshltaNqaIleavegeervHiiD 116
                     ++ +s++g+p qR+++yf+eAL++++ +++  +++    + ++++  +e+la ++l       ++  P+  +s++ta   I   v++++rvH i 
  XP_027067666.1   3 NHFSSKSGNPAQRIVHYFAEALREKIDQEWGMVASLEDLEGETRRPIDEKLALVSLqpgmmaSQQENPFSLVSQFTAIGSIRATVATARRVHLIN 97 
                     7889************************998888766666666666888888887777877789999**************************** PP

            GRAS 117 fdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210
                     f++ +G +W +++q +a+++  +   l+iT+vg     sk+++eetg+ L+ fA+++ +pf fn+ v+++l+dl+ ++++ + +E++aV l  +l
  XP_027067666.1  98 FGLDNGPHWTPIMQDFAAQDdYPIEILKITAVGT----SKQMMEETGKWLSAFADSISLPFTFNI-VVSDLKDLKEDMFKSEADEVVAVYLDRRL 187
                     *****************999566679********....**************************9.7999************************* PP

            GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                      +ll+ +  le    +++ ++k+l+P+v+vv e ea++n++ Fler  eal ++s +f+s+   + ++   r+  E+++ ++ i+n+++++g+er
  XP_027067666.1 188 WTLLAWPNYLE----ALIGVIKKLKPRVMVVKEMEASTNNPIFLERYHEALIFFSGMFESIRDCMDNHIFYRKQTEEVYCRNMIRNIITAQGKER 278
                     ***95555555....5*********************************************99998888************************** PP

            GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++rhe+++ Wr  + ++G  + +ls++ +  a++ l++ +    +++  ++++l+lgWk+ pL+svSaW+
  XP_027067666.1 279 VHRHERVAFWRTLFAKFGIVETALSQSSVRRASMFLKRSAlCSSFTIYTDRKCLILGWKGTPLISVSAWK 348
                     ****************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MCNHFSSKSG NPAQRIVHYF AEALREKIDQ EWGMVASLED LEGETRRPID EKLALVSLQP  60
GMMASQQENP FSLVSQFTAI GSIRATVATA RRVHLINFGL DNGPHWTPIM QDFAAQDDYP  120
IEILKITAVG TSKQMMEETG KWLSAFADSI SLPFTFNIVV SDLKDLKEDM FKSEADEVVA  180
VYLDRRLWTL LAWPNYLEAL IGVIKKLKPR VMVVKEMEAS TNNPIFLERY HEALIFFSGM  240
FESIRDCMDN HIFYRKQTEE VYCRNMIRNI ITAQGKERVH RHERVAFWRT LFAKFGIVET  300
ALSQSSVRRA SMFLKRSALC SSFTIYTDRK CLILGWKGTP LISVSAWKFQ YD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-47GRAS family protein