PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067533.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 458aa MW: 53133.9 Da PI: 6.6051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.4e-24	71	158	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk GF +r sk +k k+++ + ++ f+Cs+egkr ++k++ + + +++etr++C a++k++ ++ gk++v ++ eHnHel+ XP_027067533.1 71 FYQKYAKASGFGTRLSKGHKDKNSDMMLDKVFCCSREGKRPKDKRN-MSVKCPHPETRCDCSARMKINCRQAGKYRVVQFIAEHNHELS 158 9***************************************9999.999***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MENDLPIHEI QSCCKLDFED VDLEEINDNA LPLCITDGSQ GNQNFLPLAI PDELILKFGM 60 EFDIEVATRY FYQKYAKASG FGTRLSKGHK DKNSDMMLDK VFCCSREGKR PKDKRNMSVK 120 CPHPETRCDC SARMKINCRQ AGKYRVVQFI AEHNHELSTP SKTHLFKSHK HMTIAHKAEI 180 EMARICGIAP KQSIELMSKQ VGGRENLGFI RDDLKNYLRC KRSIPMMQGD TGGVLEYLQR 240 MQLEDPNFYS AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGKPIALFV 300 GVNHHKQSTI FGAVLLYDET IGTFEWLFDT FAKAMIGKIP RTILTDQDRR MATVLASQWP 360 TTYHRLCIWY IYQNAATHLA DVFKDFQNFA ADFSHCIYDY ENENDFFAGW SEMLKMYGLE 420 DNKWLKKMLI SQFVEGIFIN FFFSVQGFVL PYRFLEVE

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MENDLPIHEI QSCCKLDFED VDLEEINDNA LPLCITDGSQ GNQNFLPLAI PDELILKFGM  60
EFDIEVATRY FYQKYAKASG FGTRLSKGHK DKNSDMMLDK VFCCSREGKR PKDKRNMSVK  120
CPHPETRCDC SARMKINCRQ AGKYRVVQFI AEHNHELSTP SKTHLFKSHK HMTIAHKAEI  180
EMARICGIAP KQSIELMSKQ VGGRENLGFI RDDLKNYLRC KRSIPMMQGD TGGVLEYLQR  240
MQLEDPNFYS AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGKPIALFV  300
GVNHHKQSTI FGAVLLYDET IGTFEWLFDT FAKAMIGKIP RTILTDQDRR MATVLASQWP  360
TTYHRLCIWY IYQNAATHLA DVFKDFQNFA ADFSHCIYDY ENENDFFAGW SEMLKMYGLE  420
DNKWLKKMLI SQFVEGIFIN FFFSVQGFVL PYRFLEVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-82	FAR1 family protein