PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067360.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 666aa MW: 77254.9 Da PI: 8.868

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.6e-22	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y+ v Fsvrk++ +k ++g +t+r+++C keg++++ + + +k ++traet+tgC+ak+ + +++ + k++v +l+ eHnH+l XP_027067360.1 21 NFYNRYGLVVRFSVRKDYLNKD-KDGVVTSRRYTCCKEGFKRRYEGD-VKPKKTRAETKTGCEAKMGIILNReTMKYQVRDLVIEHNHTL 108 6***************9998.8999************9999.9***************999989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MEKALCPKIG MKFQLEDKTY NFYNRYGLVV RFSVRKDYLN KDKDGVVTSR RYTCCKEGFK 60 RRYEGDVKPK KTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ 120 RKVSISQGTQ TEIANDAGIS LKQSHELIGK EAGGLGNIGY TRNDLKRYLQ TKRERGLKYG 180 EAGTMLRYFK EQKLENPSFF HAEQLDCEEQ ITNIFWADAL MLMDYTYFGD MVTFDTTYKA 240 NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TVESFKWVFS TFVEAVCGMH PKTIFIDQDT 300 AMAAAISAIV PLTYHGLCTF HIRVNFMKYL GNYYKDGSNL SYRFAECMYE IQDENEFIMA 360 WDAMLKEHKL ETNEWLRGIY PYRKKWAKCF MKGPWTVGIR STQLSESLNA SIKKYLKIDH 420 DLVQFFKHFN RVVDEKRYNE LRTEYHSRQK LPMLGLQQTP ILIQTASIYS LCMFVAFQNE 480 YDESTTMVIL DQKHTTMHVE YSVSQYDGGR ERRVTLNPIT KDITCSCNLF EQEGILCSHA 540 LKMYDMVGTK FIPNQYVTKR WTKKARSGGS VDCKDREISS NPSLSIFHRY RLLASEMVRL 600 ATRAAMSEAA TKLDSSVMSE LSKRVKMLFC GEIDEITQNS ASMDLCKEIQ VQNVAGHFVT 660 PTGLKK

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MEKALCPKIG MKFQLEDKTY NFYNRYGLVV RFSVRKDYLN KDKDGVVTSR RYTCCKEGFK  60
RRYEGDVKPK KTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHTLHI SECAHMMRSQ  120
RKVSISQGTQ TEIANDAGIS LKQSHELIGK EAGGLGNIGY TRNDLKRYLQ TKRERGLKYG  180
EAGTMLRYFK EQKLENPSFF HAEQLDCEEQ ITNIFWADAL MLMDYTYFGD MVTFDTTYKA  240
NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TVESFKWVFS TFVEAVCGMH PKTIFIDQDT  300
AMAAAISAIV PLTYHGLCTF HIRVNFMKYL GNYYKDGSNL SYRFAECMYE IQDENEFIMA  360
WDAMLKEHKL ETNEWLRGIY PYRKKWAKCF MKGPWTVGIR STQLSESLNA SIKKYLKIDH  420
DLVQFFKHFN RVVDEKRYNE LRTEYHSRQK LPMLGLQQTP ILIQTASIYS LCMFVAFQNE  480
YDESTTMVIL DQKHTTMHVE YSVSQYDGGR ERRVTLNPIT KDITCSCNLF EQEGILCSHA  540
LKMYDMVGTK FIPNQYVTKR WTKKARSGGS VDCKDREISS NPSLSIFHRY RLLASEMVRL  600
ATRAAMSEAA TKLDSSVMSE LSKRVKMLFC GEIDEITQNS ASMDLCKEIQ VQNVAGHFVT  660
PTGLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-98	FAR1 family protein