PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067018.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 402aa MW: 44529.4 Da PI: 4.647

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067018.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.9	7.3e-17	241	289	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++ dAA Lgv+ ++LKriCR +GI+RWP Rk +++ XP_027067018.1 241 GITREVLEQNSWRSLLDAAEVLGVSRSTLKRICRDFGINRWPPRKARKV 289 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MCEEDPRTLL NSLMETLKER LGSSFKIASG QELGQKLTVE VIKVSPEDKS DFFEICNTTS 60 SESTPGLVEV QEGAGMAQLD FSSQQVDAAN GSMNGIHEQQ NGSVGSTPRL AKAQGGEGMT 120 QVDFPPQQVD TTSAYMNGVH GQQSGISGSP PRTEHTQELT VGVDVAHNSL NGIYEQNNGI 180 VESPHRQELP QNIENIAHDE GNMEIDVANP ERGGASIEPR DSEVINTKKQ KSSYTLKSEL 240 GITREVLEQN SWRSLLDAAE VLGVSRSTLK RICRDFGINR WPPRKARKVN QASAEQRVVQ 300 PSTENTEEGH RPDTTRLEDD SSIWVKAEYQ GDTMKFRLPL SAHKFNLEEK VAQRLNLPIG 360 SFKIQYQDEE DEWIWIACDE DLSTCTSTLS SLGRTTIRLL VR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MCEEDPRTLL NSLMETLKER LGSSFKIASG QELGQKLTVE VIKVSPEDKS DFFEICNTTS  60
SESTPGLVEV QEGAGMAQLD FSSQQVDAAN GSMNGIHEQQ NGSVGSTPRL AKAQGGEGMT  120
QVDFPPQQVD TTSAYMNGVH GQQSGISGSP PRTEHTQELT VGVDVAHNSL NGIYEQNNGI  180
VESPHRQELP QNIENIAHDE GNMEIDVANP ERGGASIEPR DSEVINTKKQ KSSYTLKSEL  240
GITREVLEQN SWRSLLDAAE VLGVSRSTLK RICRDFGINR WPPRKARKVN QASAEQRVVQ  300
PSTENTEEGH RPDTTRLEDD SSIWVKAEYQ GDTMKFRLPL SAHKFNLEEK VAQRLNLPIG  360
SFKIQYQDEE DEWIWIACDE DLSTCTSTLS SLGRTTIRLL VR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-12	Nin-like family protein