PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067017.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 524aa MW: 58193.1 Da PI: 4.9958

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.4	1e-16	363	411	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++ dAA Lgv+ ++LKriCR +GI+RWP Rk +++ XP_027067017.1 363 GITREVLEQNSWRSLLDAAEVLGVSRSTLKRICRDFGINRWPPRKARKV 411 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MPILLSHSST GQDGEIAKIK EALSEVRKIH GLVYNDTETW TSSGEILSSR WGEDFIRKGQ 60 GVVGRAFSSK SACFCRDVRQ LSITEYPLVV QARYLKRSAC FAVCLQSPCL KNCIYVLEFF 120 LPMCEEDPRT LLNSLMETLK ERLGSSFKIA SGQELGQKLT VEVIKVSPED KSDFFEICNT 180 TSSESTPGLV EVQEGAGMAQ LDFSSQQVDA ANGSMNGIHE QQNGSVGSTP RLAKAQGGEG 240 MTQVDFPPQQ VDTTSAYMNG VHGQQSGISG SPPRTEHTQE LTVGVDVAHN SLNGIYEQNN 300 GIVESPHRQE LPQNIENIAH DEGNMEIDVA NPERGGASIE PRDSEVINTK KQKSSYTLKS 360 ELGITREVLE QNSWRSLLDA AEVLGVSRST LKRICRDFGI NRWPPRKARK VNQASAEQRV 420 VQPSTENTEE GHRPDTTRLE DDSSIWVKAE YQGDTMKFRL PLSAHKFNLE EKVAQRLNLP 480 IGSFKIQYQD EEDEWIWIAC DEDLSTCTST LSSLGRTTIR LLVR

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MPILLSHSST GQDGEIAKIK EALSEVRKIH GLVYNDTETW TSSGEILSSR WGEDFIRKGQ  60
GVVGRAFSSK SACFCRDVRQ LSITEYPLVV QARYLKRSAC FAVCLQSPCL KNCIYVLEFF  120
LPMCEEDPRT LLNSLMETLK ERLGSSFKIA SGQELGQKLT VEVIKVSPED KSDFFEICNT  180
TSSESTPGLV EVQEGAGMAQ LDFSSQQVDA ANGSMNGIHE QQNGSVGSTP RLAKAQGGEG  240
MTQVDFPPQQ VDTTSAYMNG VHGQQSGISG SPPRTEHTQE LTVGVDVAHN SLNGIYEQNN  300
GIVESPHRQE LPQNIENIAH DEGNMEIDVA NPERGGASIE PRDSEVINTK KQKSSYTLKS  360
ELGITREVLE QNSWRSLLDA AEVLGVSRST LKRICRDFGI NRWPPRKARK VNQASAEQRV  420
VQPSTENTEE GHRPDTTRLE DDSSIWVKAE YQGDTMKFRL PLSAHKFNLE EKVAQRLNLP  480
IGSFKIQYQD EEDEWIWIAC DEDLSTCTST LSSLGRTTIR LLVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-23	Nin-like family protein