PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027067010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 540aa MW: 59955.5 Da PI: 4.9975 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 62.7 | 6.5e-20 | 370 | 418 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + +++dAAk++gv+ ++LKriCR+yGIkRWP Rk +++ XP_027067010.1 370 GITREVLEQNSARKLEDAAKNIGVSRSTLKRICREYGIKRWPPRKARKV 418 6999*****************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence |
MNLTITGVSL LAKVNSCQDG EIARIEKVQN KVSEICGLGY GGAKTWTTFG EILSSREGVD 60 FIRKGQGVVG RAFSSKSAFF CRDIRQLSIT DYPLVVQARS CEHSACFAVC LQSSCSNNCI 120 YVLEFFLPTN EEDEEDPRTL LNSIMETLKE HLGSSFKIAS GQELGQKLTV EVIKVSPEDG 180 FGSFEICSTT GIECTPWLGE VQRGEGMMQL DLSSQQVDAA NGSMDGIHNQ QNGSVGSTPR 240 LAKAQGGEGM MQVDFSSQRV DTTNACINGV HGQQNGIVGS PPRPEHTQGF DNISYQELNL 300 AGVDVIYEQQ NGIVRSSTGQ VLMQNMVSIE HDEPIVEDPE REGAGIEQRD NEVTNLKMQK 360 PSCPLKSELG ITREVLEQNS ARKLEDAAKN IGVSRSTLKR ICREYGIKRW PPRKARKVSQ 420 ALAVQKTVQP STEDAHEHHR SDATRLEYDN GMWVKAEYQG RMIKFRLPFS ARKIDLEENV 480 VQQLNLAMGS FIIEYQDEDS DRIWITCDEV LRTAMSTLSS LGRTTIKMYI VEDSPNRRDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 1e-24 | Nin-like family protein |