PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067009.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 540aa MW: 59955.5 Da PI: 4.9975

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.7	6.5e-20	370	418	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + +++dAAk++gv+ ++LKriCR+yGIkRWP Rk +++ XP_027067009.1 370 GITREVLEQNSARKLEDAAKNIGVSRSTLKRICREYGIKRWPPRKARKV 418 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MNLTITGVSL LAKVNSCQDG EIARIEKVQN KVSEICGLGY GGAKTWTTFG EILSSREGVD 60 FIRKGQGVVG RAFSSKSAFF CRDIRQLSIT DYPLVVQARS CEHSACFAVC LQSSCSNNCI 120 YVLEFFLPTN EEDEEDPRTL LNSIMETLKE HLGSSFKIAS GQELGQKLTV EVIKVSPEDG 180 FGSFEICSTT GIECTPWLGE VQRGEGMMQL DLSSQQVDAA NGSMDGIHNQ QNGSVGSTPR 240 LAKAQGGEGM MQVDFSSQRV DTTNACINGV HGQQNGIVGS PPRPEHTQGF DNISYQELNL 300 AGVDVIYEQQ NGIVRSSTGQ VLMQNMVSIE HDEPIVEDPE REGAGIEQRD NEVTNLKMQK 360 PSCPLKSELG ITREVLEQNS ARKLEDAAKN IGVSRSTLKR ICREYGIKRW PPRKARKVSQ 420 ALAVQKTVQP STEDAHEHHR SDATRLEYDN GMWVKAEYQG RMIKFRLPFS ARKIDLEENV 480 VQQLNLAMGS FIIEYQDEDS DRIWITCDEV LRTAMSTLSS LGRTTIKMYI VEDSPNRRDQ

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MNLTITGVSL LAKVNSCQDG EIARIEKVQN KVSEICGLGY GGAKTWTTFG EILSSREGVD  60
FIRKGQGVVG RAFSSKSAFF CRDIRQLSIT DYPLVVQARS CEHSACFAVC LQSSCSNNCI  120
YVLEFFLPTN EEDEEDPRTL LNSIMETLKE HLGSSFKIAS GQELGQKLTV EVIKVSPEDG  180
FGSFEICSTT GIECTPWLGE VQRGEGMMQL DLSSQQVDAA NGSMDGIHNQ QNGSVGSTPR  240
LAKAQGGEGM MQVDFSSQRV DTTNACINGV HGQQNGIVGS PPRPEHTQGF DNISYQELNL  300
AGVDVIYEQQ NGIVRSSTGQ VLMQNMVSIE HDEPIVEDPE REGAGIEQRD NEVTNLKMQK  360
PSCPLKSELG ITREVLEQNS ARKLEDAAKN IGVSRSTLKR ICREYGIKRW PPRKARKVSQ  420
ALAVQKTVQP STEDAHEHHR SDATRLEYDN GMWVKAEYQG RMIKFRLPFS ARKIDLEENV  480
VQQLNLAMGS FIIEYQDEDS DRIWITCDEV LRTAMSTLSS LGRTTIKMYI VEDSPNRRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-24	Nin-like family protein