PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027067001.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 731aa MW: 81793.2 Da PI: 4.7859

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027067001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46.8	5.8e-15	562	609	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + +++dAAk++ v+ ++LKriCR +GI+R P Rk +++ XP_027067001.1 562 ITREVLEQNSARKLEDAAKNIRVSRSTLKRICRDFGINRCPPRKARKV 609 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MAIEAHAPFS TEGLGPCELS CSRSTYHSPD LLKQLWVFWS RCGDDEGRCG KSHHLSATAD 60 GAMIKNQIKR FLELLLDPLL PEWWRCLVQF WGLVKIGDKT YLTTCDQPFA LQYSSHLEVK 120 KLCEYRKHCL EYLIPVDDDD DDVQLIGPAG RVFCSGLPEY ALDVRDYTSR EYLQRDYAVD 180 CVEQYWALPI YHAPGHVPIG VLEIVSPHNS YIPQHWVLEK LQNLPRDLNL TTTCVSLLAE 240 VNSCQDGEIA QIGKALLGAS ATHQLDDTET WTSSGEILSS HYGVDFIRKG QGVVGRAFSS 300 KSACFCRDVR QLSITEYPVV HTARSCEYSA CFAVCLQSSC SDNCIYVLEF FLPTDEEDYG 360 DPRTLLRSLM EILKERLGSS FKIASGQELG QKLTVEVIKV SPGNEFDSFE ICNTTGMEST 420 PRLGEVQGGG GEGMTQVDFS SQQVDAANAY INGVHGQQSG IVGSPPRSER AQGFVDISYL 480 ELNLAGVDVA HNSMNGIYEQ QAGIVRSSIG QVLVQNMVSV ADYEPIVEDP ERDDASIEES 540 GDEVTNLKMK EPSCTLKCNL GITREVLEQN SARKLEDAAK NIRVSRSTLK RICRDFGINR 600 CPPRKARKVS QALAVQKTVQ PSTEDTHEQH RSDATRVEDD NGMWVKAEYQ GRMIKFRLPF 660 SARKIDLEEN VVQRLNVALG SFIIEYQDED SDRIWITCDE VLRTAMSTLS SLDRTTIKMY 720 IVEDSPSKRD Q

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MAIEAHAPFS TEGLGPCELS CSRSTYHSPD LLKQLWVFWS RCGDDEGRCG KSHHLSATAD  60
GAMIKNQIKR FLELLLDPLL PEWWRCLVQF WGLVKIGDKT YLTTCDQPFA LQYSSHLEVK  120
KLCEYRKHCL EYLIPVDDDD DDVQLIGPAG RVFCSGLPEY ALDVRDYTSR EYLQRDYAVD  180
CVEQYWALPI YHAPGHVPIG VLEIVSPHNS YIPQHWVLEK LQNLPRDLNL TTTCVSLLAE  240
VNSCQDGEIA QIGKALLGAS ATHQLDDTET WTSSGEILSS HYGVDFIRKG QGVVGRAFSS  300
KSACFCRDVR QLSITEYPVV HTARSCEYSA CFAVCLQSSC SDNCIYVLEF FLPTDEEDYG  360
DPRTLLRSLM EILKERLGSS FKIASGQELG QKLTVEVIKV SPGNEFDSFE ICNTTGMEST  420
PRLGEVQGGG GEGMTQVDFS SQQVDAANAY INGVHGQQSG IVGSPPRSER AQGFVDISYL  480
ELNLAGVDVA HNSMNGIYEQ QAGIVRSSIG QVLVQNMVSV ADYEPIVEDP ERDDASIEES  540
GDEVTNLKMK EPSCTLKCNL GITREVLEQN SARKLEDAAK NIRVSRSTLK RICRDFGINR  600
CPPRKARKVS QALAVQKTVQ PSTEDTHEQH RSDATRVEDD NGMWVKAEYQ GRMIKFRLPF  660
SARKIDLEEN VVQRLNVALG SFIIEYQDED SDRIWITCDE VLRTAMSTLS SLDRTTIKMY  720
IVEDSPSKRD Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-36	Nin-like family protein