PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066750.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 768aa MW: 86325.7 Da PI: 5.9786

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.2e-19	607	654	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027066750.1 607 ITREILEQNSTRKLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 654 89999***************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MAMEAQTSPS PPFCTEGLGP CELSYSHSCE SSSFLGRIKN NYTWWVFWSR CGNDEGADGF 60 SATADGAVIK DQIKRLLQLV TKTERCLVQF WGLVKNEDKT YLTTRDQPFA LQCSSHLDVK 120 KLCEYRKHCL EYLIPVDDDG DEVQRIIGPP GRVFRSGLPE YAWNVGDYTS REYPQRDYAI 180 SRVAEYWALP IYYHPTQHLP IGTLEFASPS YTCLPRFRVL EKLKNLPREL NLTTTCVSLL 240 AKVNSCQRGE IAIIDEALSK VREICGLGYG DIKTWTISGE ILSRHRGIDF IRKGQGVVGR 300 AFSSKSACFC RDIRQLSITN YPLVPIARSY KYSACFAVCL QSSCSNNCIY VLEFFLPMNE 360 KDCRDPRALL HILMETLEES LQSSFKIASG QELGQKLTVE VIKVSPENEF DSFEICSTTG 420 VESTPRFGEV QRGEGVLQLD FPSQQVDDAN GSMNGIHEQQ NGSVGSTPRL AKAQGGEGMM 480 QGDFSSQRVD SANAYINGVH GQQSGIVGSP PRPERIQGFV DRSYLELNLA GVDVVHNSMN 540 GIYEQQNGIV GSSTGQVLMQ NIFSVADHEP IVEDPDRDDA SIEHSGNKVT NLKMREPSYT 600 LKSDLGITRE ILEQNSTRKL EDAAKNIGVS RSTLKRICRE YGINRWPPRK ARKVSQAFAV 660 QKTVQPATEY IEENHQSDAT RLEDDISMWV IKVKYQEDNI KFELSSSARK IDLEKNIAQR 720 FNLSLGSFKI KYQDELNEWI LITCDTDLSF CMKTLSKLGR TTIEMLVS

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MAMEAQTSPS PPFCTEGLGP CELSYSHSCE SSSFLGRIKN NYTWWVFWSR CGNDEGADGF  60
SATADGAVIK DQIKRLLQLV TKTERCLVQF WGLVKNEDKT YLTTRDQPFA LQCSSHLDVK  120
KLCEYRKHCL EYLIPVDDDG DEVQRIIGPP GRVFRSGLPE YAWNVGDYTS REYPQRDYAI  180
SRVAEYWALP IYYHPTQHLP IGTLEFASPS YTCLPRFRVL EKLKNLPREL NLTTTCVSLL  240
AKVNSCQRGE IAIIDEALSK VREICGLGYG DIKTWTISGE ILSRHRGIDF IRKGQGVVGR  300
AFSSKSACFC RDIRQLSITN YPLVPIARSY KYSACFAVCL QSSCSNNCIY VLEFFLPMNE  360
KDCRDPRALL HILMETLEES LQSSFKIASG QELGQKLTVE VIKVSPENEF DSFEICSTTG  420
VESTPRFGEV QRGEGVLQLD FPSQQVDDAN GSMNGIHEQQ NGSVGSTPRL AKAQGGEGMM  480
QGDFSSQRVD SANAYINGVH GQQSGIVGSP PRPERIQGFV DRSYLELNLA GVDVVHNSMN  540
GIYEQQNGIV GSSTGQVLMQ NIFSVADHEP IVEDPDRDDA SIEHSGNKVT NLKMREPSYT  600
LKSDLGITRE ILEQNSTRKL EDAAKNIGVS RSTLKRICRE YGINRWPPRK ARKVSQAFAV  660
QKTVQPATEY IEENHQSDAT RLEDDISMWV IKVKYQEDNI KFELSSSARK IDLEKNIAQR  720
FNLSLGSFKI KYQDELNEWI LITCDTDLSF CMKTLSKLGR TTIEMLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-39	Nin-like family protein