PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066561.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 261aa    MW: 30028.7 Da    PI: 7.5818
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35231142102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv + +         weF+++ F+kg+++ll++
  XP_027066561.1  23 FLLKTYMLVEDPSTDEVISWNTEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATAR---------WEFSNDMFRKGERDLLCE 108
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_027066561.1 109 IRRRKA 114
                     ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MMMEPECEKS LLEYVRKSSP PPFLLKTYML VEDPSTDEVI SWNTEGTAFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATAR WEFSNDMFRK GERDLLCEIR RRKAWTNKSH  120
SNNNKGQQNH HHHHQAAAAA AAPTKDQSDE DQSQRSSSTS SSSDQYTVLI DENKRLKREN  180
GVLSSELSTM KKKCKELLDL VAVYADQAGE KNDGSIVDND EFDERPKLFG VRLEVQGEIE  240
RKRKFAEISR NAQVILFQSC K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-67HSF family protein