PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066217.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 161aa    MW: 17684.2 Da    PI: 9.6879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-104284754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  XP_027066217.1 42 VAARERRHRISERFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFL 84
                    56799*****************95.....5****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MEGSSLRDRR SCALASNGKD KKGGGKRPAG KAAKLSTDAQ SVAARERRHR ISERFKILQS  60
LVPGGSKMDT VSMLEEAIHY VKFLKTQIWL HQTMINFVDT DPSLPLPSAY HLPANQADDL  120
YSRLNMQGDQ TNALAALPQL GFAYSGPLCG ESISLDKTFL Y