PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027066211.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 421aa MW: 46056.1 Da PI: 9.0769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027066211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	349	394	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s a++L +Av+YIk+Lq XP_027066211.1 349 SIAERVRRTRISERMRKLQDLVPNM----DKQTSTADMLDLAVDYIKDLQ 394 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MYGDSQALSS DDSSIFHSSW NAKEALFAQS RELFMDSVSA SSTNYSSLEF NNQYTGANQN 60 SSGLLRFRSA PSSLLESLSA ADKIVENSVE NRGLTSRFNS SCEAQSNQVS HSSSTKGYTL 120 KSQLPPQYPR ASRGRLAQLG SVNGVYRVPG SMAMDHQRQP KMSPTLTRQN SSPAELFSHL 180 TAQSGYSTMR GVGNYRLTNG ASGDLSPSSN RFKGPMSFSS GSPTTLGMLS RISEVENETG 240 GADGSNDDKL GNTNGDTQLY GSGFGFGSWN SSPKFAENLT GLKREIDSDQ NLFPDSQGGE 300 PRNRPNILSH HLSLPNTAEL AAMDKLMQFQ DTVPCKIRAK RGCATHPRSI AERVRRTRIS 360 ERMRKLQDLV PNMDKQTSTA DMLDLAVDYI KDLQKQYKTL SDIRANCKCS AMQKPVPDQM 420 V

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MYGDSQALSS DDSSIFHSSW NAKEALFAQS RELFMDSVSA SSTNYSSLEF NNQYTGANQN  60
SSGLLRFRSA PSSLLESLSA ADKIVENSVE NRGLTSRFNS SCEAQSNQVS HSSSTKGYTL  120
KSQLPPQYPR ASRGRLAQLG SVNGVYRVPG SMAMDHQRQP KMSPTLTRQN SSPAELFSHL  180
TAQSGYSTMR GVGNYRLTNG ASGDLSPSSN RFKGPMSFSS GSPTTLGMLS RISEVENETG  240
GADGSNDDKL GNTNGDTQLY GSGFGFGSWN SSPKFAENLT GLKREIDSDQ NLFPDSQGGE  300
PRNRPNILSH HLSLPNTAEL AAMDKLMQFQ DTVPCKIRAK RGCATHPRSI AERVRRTRIS  360
ERMRKLQDLV PNMDKQTSTA DMLDLAVDYI KDLQKQYKTL SDIRANCKCS AMQKPVPDQM  420
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-80	bHLH family protein