PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066203.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 563aa    MW: 63045.1 Da    PI: 4.8343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.74.7e-452055621373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l +lL++  eav +g++ela+ ++ r+ e+  p g++++Rla+ + +  +++        y      ++s   +++  aa+k+f++ +P+ +f+h
  XP_027066203.1 205 LHHLLTAHGEAVGNGHQELAEVIVRRITERIDPLGEALERLAFNLFQSAENQGC------Y----LGQQS---TKNFEAAFKAFYQWFPYGRFAH 286
                     579999************************************987776555443......3....22333...45677899************** PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taN+aIlea+ ++ e++Hi+Dfd+++G+QWp+L+++++ +     slR+T + s   +s    eet++rL + A++lg++++ + +   +ledl
  XP_027066203.1 287 FTANSAILEAMPSDaETIHIVDFDMGEGIQWPPLMDSISRK---GKSLRLTSIIS--GDSCWVFEETRQRLYDHARSLGLRLNVEEM---ALEDL 373
                     ***********98889**********************986...458********..45999********************99997...88999 PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsl 271
                       e+ r+k+    +E la nl+++l ++  ++ + + +  e+L l k+l         ++++ + e   ++ n +++   f + + +y alf+s+
  XP_027066203.1 374 VAEMKRTKKkggaREWLAFNLMVALPHMG-RR-ADRRRVVEFLTLAKDLlvysagDKGIITIGDGEagGNLqNCPEYSSFFNSHFTHYQALFESM 466
                     88888888888889**************8.33.33334799******995554433579***999943455677799****************** PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve...eesgslv 359
                     e ++p    e+ri +E  +l++ +++            h  +++W+++ ++   +G+   ++s +   +ak ++++ k   y+v+   e+++++v
  XP_027066203.1 467 ECNFPVYLaEARIAMESLFLAPYVSS------------HSWFQHWQDARGSqplCGLDGRRMSRDCLIEAKEIVNEQKAS-YKVNfqkENENEIV 548
                     *****87669********99988764............55577887766544559**********************954.888766677999** PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     l W++ pLv vS+W
  XP_027066203.1 549 LEWRGIPLVRVSSW 562
                     ************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    
MAGGNPVSPK SQLIRELRVL LPLQSQQCIS TKAKRKMMGS QLLQPSWPLY STVNLDHAGL  60
HSFPMDICID EPHDFSSSFA TEESSGISFD SYFAAMTSPD SLVEFPIFDD EKRGGDTMAH  120
IMDGLEPISS SGAIEEDCQW LEESDNGEDY ISSQLTPEAD AWRACPPMEQ SKPGSASTMN  180
ATPSGSMSLT FPPVNNMGTD TQLGLHHLLT AHGEAVGNGH QELAEVIVRR ITERIDPLGE  240
ALERLAFNLF QSAENQGCYL GQQSTKNFEA AFKAFYQWFP YGRFAHFTAN SAILEAMPSD  300
AETIHIVDFD MGEGIQWPPL MDSISRKGKS LRLTSIISGD SCWVFEETRQ RLYDHARSLG  360
LRLNVEEMAL EDLVAEMKRT KKKGGAREWL AFNLMVALPH MGRRADRRRV VEFLTLAKDL  420
LVYSAGDKGI ITIGDGEAGG NLQNCPEYSS FFNSHFTHYQ ALFESMECNF PVYLAEARIA  480
MESLFLAPYV SSHSWFQHWQ DARGSQPLCG LDGRRMSRDC LIEAKEIVNE QKASYKVNFQ  540
KENENEIVLE WRGIPLVRVS SWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-22GRAS family protein