PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066116.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 320aa    MW: 35867 Da    PI: 8.2277
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.71.6e-32190246158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  XP_027066116.1 190 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 246
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MREKSGTFDK LESAVKSISH ASTDSRSYLS GFENNSSVST EVLVFGNSRS SLTLPSQQNA  60
GLVTTSNELE AKFLERSGGE IYREVETAKF LESDQNSAQE LLKFSSIASP TMSEHLIPVT  120
QLKLACTTYP CPESSFWGNS PDHGQTWENG MRGKSDSGNR FLLSDDSLEV HPDLQSMHDS  180
RLALPLELAE EPVYVNAKQY HGILRRRQLR AKAELENKVA KARKPYLHES RHLHAMRRAR  240
GCGGRFLSKK NVDKSDSRAA SKKSIDFNAT PTEMKDSLGS QHPFSSTSQK SCNEVKGFLL  300
QEMQNTNTFE WGYQYHCKTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-28NF-YA family protein