PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027066017.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 194aa    MW: 21772.7 Da    PI: 8.5813
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027066017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.61.1e-64111676170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse. 99 
                      +eq+Cy+ CnfCn +lavsvP +slf vvtvrCGhCt+l svn+a a q l+++s  +     ++++++ +  ++++    ++ +  + ++++ 
  XP_027066017.1  11 PPEQLCYIPCNFCNIVLAVSVPCSSLFDVVTVRCGHCTNLWSVNMAAAFQSLSSSSCWQ-----DVQAQNSTPPDQYRIDFGSSAKGYNIKPATr 100
                     689*************************************************9999633.....3333333334444444333333333333320 PP

           YABBY 100 .klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++++  +e       v+rPPekrqrvPsayn+fikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl
  XP_027066017.1 101 pSIPNRAEER-----IVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDINHREAFSTAAKNWAHFPHIHFGL 167
                     0233333333.....379****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MSSCSDVSPP PPEQLCYIPC NFCNIVLAVS VPCSSLFDVV TVRCGHCTNL WSVNMAAAFQ  60
SLSSSSCWQD VQAQNSTPPD QYRIDFGSSA KGYNIKPATR PSIPNRAEER IVNRPPEKRQ  120
RVPSAYNQFI KEEIQRIKAN NPDINHREAF STAAKNWAHF PHIHFGLMLE TNNKPKLGED  180
SEKRLTPRTA LLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.14e-84YABBY family protein