PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065975.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 417aa MW: 47607.6 Da PI: 6.302

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	56.3	6.4e-18	262	310	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ ++kdAAk L+v+ ++LKr+CR+y I+RWP+Rk +++ XP_027065975.1 262 GITREVLEQNSWRSLKDAAKVLQVSRSTLKRRCREYDIDRWPSRKARKV 310 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDVYAWTSGD NQMGQDWFVD EAELFEMPNL LVDMAVGLLV SPPRLGPVVS VESPEISDAY 60 SLWENDTRIP HQMRGFRLDG CGFGSSQVFA ADGAPKRGKI LNLILEDFFR TRELRERELV 120 LLKKGNKTCL TTRAQPFHYY SHQDFKKPCD VHGQQRGIVG SPIRPERTQG FINIPFPNLN 180 LAGVDVAHNS VSGIYEHKYG VVESPHRQEL LQNIENIAHD EGNMEIDVAN PERGGASIEP 240 RDSEVINIKR QKSSHTLKSK LGITREVLEQ NSWRSLKDAA KVLQVSRSTL KRRCREYDID 300 RWPSRKARKV NQAFAEQRVV QPSTENTEEQ HRPDTTRLGD DSSIWVKAEY QGYTMKFRLP 360 LSAHKFNLEE KVAQRLNLPT GSFKIEYQDE ENEWIWIACD EDLSTCMSTL SSLVSNC

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDVYAWTSGD NQMGQDWFVD EAELFEMPNL LVDMAVGLLV SPPRLGPVVS VESPEISDAY  60
SLWENDTRIP HQMRGFRLDG CGFGSSQVFA ADGAPKRGKI LNLILEDFFR TRELRERELV  120
LLKKGNKTCL TTRAQPFHYY SHQDFKKPCD VHGQQRGIVG SPIRPERTQG FINIPFPNLN  180
LAGVDVAHNS VSGIYEHKYG VVESPHRQEL LQNIENIAHD EGNMEIDVAN PERGGASIEP  240
RDSEVINIKR QKSSHTLKSK LGITREVLEQ NSWRSLKDAA KVLQVSRSTL KRRCREYDID  300
RWPSRKARKV NQAFAEQRVV QPSTENTEEQ HRPDTTRLGD DSSIWVKAEY QGYTMKFRLP  360
LSAHKFNLEE KVAQRLNLPT GSFKIEYQDE ENEWIWIACD EDLSTCMSTL SSLVSNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	3e-12	Nin-like family protein