PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065579.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 229aa    MW: 26010.5 Da    PI: 4.8343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065579.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-124486754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+ YI++L
  XP_027065579.1 44 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIGYIQEL 86
                    57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MDDTWENMFL QTDELDSYLD ESFSYYDSSS PEGAQSSAAS KNIVSERNRR KKLNERLFAL  60
RAVVPNISKM DKASIIKDAI GYIQELHNQE RMIQAEISEL ESRRSIFLDF DQEISYNSKP  120
KRSRFEQTCD SAGSRSSPIE VLELRVSHMG EKTIVVSLTC SKRTDTMVKI CEVFESLNLK  180
IITANITAFS GRLLKTVFLE ANEEEKDVVK IKIQTAIAAL NDPDSPMSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-86bHLH family protein