PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065510.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 544aa    MW: 59212.9 Da    PI: 5.8531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.62.5e-1241725401374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilk 92 
                     lv++L++cAe v+ g+l la +l+a l+ l  + +++  + ++a yf  AL++r++  v+ + ++ +++++++     +    ++ f+e+ P+lk
  XP_027065510.1 172 LVHVLISCAESVQCGNLPLAGSLIADLQALltRVNTACGIGKVAGYFIDALSRRIFTAVPpGAASFMSCWASE-----D-EILYHHFYEAAPYLK 260
                     689**************************96555566799*****************5541555555666664.....3.456789********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaIlea++g+++vH++Df+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l  +g rLa +A++++v+f f+ ++a+rle
  XP_027065510.1 261 FAHFTANQAILEAFQGHDCVHVVDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLCVIGLRLAGLARSVNVKFAFRGVAASRLE 355
                     *********************************************************************************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldes.vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     d+++++L+ +p+Ea+aVn++lqlh+ll  + v+ +s  ++vL  +++l+Pk+v++veqea+hn+++Fl+rf+eal+yys++fdslea     +++
  XP_027065510.1 356 DVKPWMLEADPNEAVAVNSILQLHKLLGPDqVHGSSSVEQVLAWIRGLNPKIVTIVEQEASHNQAEFLDRFTEALYYYSTMFDSLEAC---SNRA 447
                     **************************9654144445899**********************************************999...6899 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++ + ++++ei+n+v+ce ++r+erhe l+kW++rl+ aGFkp+ l+++a kqa++ll  ++ +g+ +ee++g+l+lgW++rpL+++SaW+
  XP_027065510.1 448 DNVLAEIYMQKEICNIVCCEDSARVERHEPLAKWKARLKGAGFKPLYLGSNAFKQASMLLTLFSAEGFCIEESEGCLTLGWHSRPLIAASAWQ 540
                     ********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MGPEGSSITS SSGSSSSCSA AARAPDHHHH HQIDQLLAGA GYSVRSSQLH QVAHRLECLE  60
SVMVHNQNIP THLPLQYHLA NDVVHYNPSD LSSWVDNLLS ELHQLQPGSS ASSSGLPPCP  120
GNYESTGWSP SEFHAPPPPR NGNGNESENQ QPQEALSHVL HQMDQEDSSI QLVHVLISCA  180
ESVQCGNLPL AGSLIADLQA LLTRVNTACG IGKVAGYFID ALSRRIFTAV PPGAASFMSC  240
WASEDEILYH HFYEAAPYLK FAHFTANQAI LEAFQGHDCV HVVDFNLMQG LQWPALIQAL  300
ALRPGGPPLL RLTGIGPPSP DGRDSLCVIG LRLAGLARSV NVKFAFRGVA ASRLEDVKPW  360
MLEADPNEAV AVNSILQLHK LLGPDQVHGS SSVEQVLAWI RGLNPKIVTI VEQEASHNQA  420
EFLDRFTEAL YYYSTMFDSL EACSNRADNV LAEIYMQKEI CNIVCCEDSA RVERHEPLAK  480
WKARLKGAGF KPLYLGSNAF KQASMLLTLF SAEGFCIEES EGCLTLGWHS RPLIAASAWQ  540
PVSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-131GRAS family protein