PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027065444.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 355aa    MW: 39166.5 Da    PI: 6.9952
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027065444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.6e-32199255158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++k+  k+rkpylheSRh+hA++R RgsgGrF
  XP_027065444.1 199 DGPIYVNAKQYHGILRRRQVRAKLEAQNKM-VKGRKPYLHESRHQHAMNRVRGSGGRF 255
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MAIRVENIHS KVLGQDSTCS MPHLVSSPWW NLQEQQLSQT SSKNLSLRVE TPSLCFEEAK  60
HLGQQIEEDQ SSHSMESSSQ SQRGATTMGK SNSQDQCISS ESGPPWLIKA IQIDPVQNES  120
FGKHVEEQPK PAFFPSNLES SANPSQIEFL QSAAQIPCIY SDPYFSSLYS AYGPQAMIQP  180
QMMGIAPARV PLPPDLAQDG PIYVNAKQYH GILRRRQVRA KLEAQNKMVK GRKPYLHESR  240
HQHAMNRVRG SGGRFLSTKK QQQQSESTLS TGSFSASIHS CQETDALEME AERSNDSRHY  300
ASTSTSSSAM GYTPDDIIFQ QHADSYISLS GQIAGSTSSG GFMQNGTPLH VPTTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-38NF-YA family protein