PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027065442.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YA

Protein Properties

Length: 356aa MW: 39295.7 Da PI: 6.8401

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027065442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.8	1.6e-32	200	256	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++k+ k+rkpylheSRh+hA++R RgsgGrF XP_027065442.1 200 DGPIYVNAKQYHGILRRRQVRAKLEAQNKM-VKGRKPYLHESRHQHAMNRVRGSGGRF 256 57**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MAIRVENIHS KVLGQDSTCS MPHLVSSPWW NLQEQQLSQT SSKNLSLRVE TPSLCFEEAK 60 HLGQQIEEDQ SSHSMESSSQ SQRGATTMGK SNSQDQCISS ESEGPPWLIK AIQIDPVQNE 120 SFGKHVEEQP KPAFFPSNLE SSANPSQIEF LQSAAQIPCI YSDPYFSSLY SAYGPQAMIQ 180 PQMMGIAPAR VPLPPDLAQD GPIYVNAKQY HGILRRRQVR AKLEAQNKMV KGRKPYLHES 240 RHQHAMNRVR GSGGRFLSTK KQQQQSESTL STGSFSASIH SCQETDALEM EAERSNDSRH 300 YASTSTSSSA MGYTPDDIIF QQHADSYISL SGQIAGSTSS GGFMQNGTPL HVPTTR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MAIRVENIHS KVLGQDSTCS MPHLVSSPWW NLQEQQLSQT SSKNLSLRVE TPSLCFEEAK  60
HLGQQIEEDQ SSHSMESSSQ SQRGATTMGK SNSQDQCISS ESEGPPWLIK AIQIDPVQNE  120
SFGKHVEEQP KPAFFPSNLE SSANPSQIEF LQSAAQIPCI YSDPYFSSLY SAYGPQAMIQ  180
PQMMGIAPAR VPLPPDLAQD GPIYVNAKQY HGILRRRQVR AKLEAQNKMV KGRKPYLHES  240
RHQHAMNRVR GSGGRFLSTK KQQQQSESTL STGSFSASIH SCQETDALEM EAERSNDSRH  300
YASTSTSSSA MGYTPDDIIF QQHADSYISL SGQIAGSTSS GGFMQNGTPL HVPTTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	7e-38	NF-YA family protein